Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCDC125 (coiled-coil domain containing 125)

Identity

Alias (NCBI)KENAE
HGNC (Hugo) CCDC125
HGNC Alias symbKENAE
LocusID (NCBI) 202243
Atlas_Id 61477
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69280175 and ends at 69332801 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCDC125   28924
Cards
Entrez_Gene (NCBI)CCDC125    coiled-coil domain containing 125
AliasesKENAE
GeneCards (Weizmann)CCDC125
Ensembl hg19 (Hinxton)ENSG00000183323 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183323 [Gene_View]  ENSG00000183323 [Sequence]  chr5:69280175-69332801 [Contig_View]  CCDC125 [Vega]
ICGC DataPortalENSG00000183323
TCGA cBioPortalCCDC125
AceView (NCBI)CCDC125
Genatlas (Paris)CCDC125
SOURCE (Princeton)CCDC125
Genetics Home Reference (NIH)CCDC125
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC125  -     chr5:69280175-69332801 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC125  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathCCDC125 - 5q13.2 [CytoView hg19]  CCDC125 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000183323
Genome Data Viewer NCBICCDC125 [Mapview hg19]  
OMIM613781   
Gene and transcription
Genbank (Entrez)AB024691 AB024692 AI141520 AK299871 AL832658
RefSeq transcript (Entrez)NM_001297696 NM_001297697 NM_176816
Consensus coding sequences : CCDS (NCBI)CCDC125
Gene ExpressionCCDC125 [ NCBI-GEO ]   CCDC125 [ EBI - ARRAY_EXPRESS ]   CCDC125 [ SEEK ]   CCDC125 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC125 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC125 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202243
GTEX Portal (Tissue expression)CCDC125
Human Protein AtlasENSG00000183323-CCDC125 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Z20   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Z20  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Z20
PhosPhoSitePlusQ86Z20
Domains : Interpro (EBI)CCDC125   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC125
SuperfamilyQ86Z20
AlphaFold pdb e-kbQ86Z20   
Human Protein Atlas [tissue]ENSG00000183323-CCDC125 [tissue]
HPRD13774
Protein Interaction databases
DIP (DOE-UCLA)Q86Z20
IntAct (EBI)Q86Z20
BioGRIDCCDC125
STRING (EMBL)CCDC125
ZODIACCCDC125
Ontologies - Pathways
QuickGOQ86Z20
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  cytoplasm  negative regulation of Rho protein signal transduction  negative regulation of Rho protein signal transduction  identical protein binding  activation of GTPase activity  negative regulation of cell motility  negative regulation of cell motility  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  cytoplasm  negative regulation of Rho protein signal transduction  negative regulation of Rho protein signal transduction  identical protein binding  activation of GTPase activity  negative regulation of cell motility  negative regulation of cell motility  
NDEx NetworkCCDC125
Atlas of Cancer Signalling NetworkCCDC125
Wikipedia pathwaysCCDC125
Orthology - Evolution
OrthoDB202243
GeneTree (enSembl)ENSG00000183323
Phylogenetic Trees/Animal Genes : TreeFamCCDC125
Homologs : HomoloGeneCCDC125
Homology/Alignments : Family Browser (UCSC)CCDC125
Gene fusions - Rearrangements
Fusion : QuiverCCDC125
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC125 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC125
dbVarCCDC125
ClinVarCCDC125
MonarchCCDC125
1000_GenomesCCDC125 
Exome Variant ServerCCDC125
GNOMAD BrowserENSG00000183323
Varsome BrowserCCDC125
ACMGCCDC125 variants
VarityQ86Z20
Genomic Variants (DGV)CCDC125 [DGVbeta]
DECIPHERCCDC125 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC125 
Mutations
ICGC Data PortalCCDC125 
TCGA Data PortalCCDC125 
Broad Tumor PortalCCDC125
OASIS PortalCCDC125 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC125  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC125
Mutations and Diseases : HGMDCCDC125
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC125
DgiDB (Drug Gene Interaction Database)CCDC125
DoCM (Curated mutations)CCDC125
CIViC (Clinical Interpretations of Variants in Cancer)CCDC125
Cancer3DCCDC125
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613781   
Orphanet
DisGeNETCCDC125
MedgenCCDC125
Genetic Testing Registry CCDC125
NextProtQ86Z20 [Medical]
GENETestsCCDC125
Target ValidationCCDC125
Huge Navigator CCDC125 [HugePedia]
ClinGenCCDC125
Clinical trials, drugs, therapy
MyCancerGenomeCCDC125
Protein Interactions : CTDCCDC125
Pharm GKB GenePA147358306
PharosQ86Z20
Clinical trialCCDC125
Miscellaneous
canSAR (ICR)CCDC125
HarmonizomeCCDC125
ARCHS4CCDC125
DataMed IndexCCDC125
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC125
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:47:41 CET 2022

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