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CCDC127 (coiled-coil domain containing 127)

Identity

Alias_symbol (synonym)FLJ25701
Other alias-
HGNC (Hugo) CCDC127
LocusID (NCBI) 133957
Atlas_Id 54194
Location 5p15.33  [Link to chromosome band 5p15]
Location_base_pair Starts at 204875 and ends at 218297 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC127 (5p15.33) / TERT (5p15.33)DSTN (20p12.1) / CCDC127 (5p15.33)PDCD6 (5p15.33) / CCDC127 (5p15.33)
CCDC127 5p15.33 / TERT 5p15.33DSTN 20p12.1 / CCDC127 5p15.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC127   30520
Cards
Entrez_Gene (NCBI)CCDC127  133957  coiled-coil domain containing 127
Aliases
GeneCards (Weizmann)CCDC127
Ensembl hg19 (Hinxton)ENSG00000164366 [Gene_View]  chr5:204875-218297 [Contig_View]  CCDC127 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164366 [Gene_View]  chr5:204875-218297 [Contig_View]  CCDC127 [Vega]
ICGC DataPortalENSG00000164366
TCGA cBioPortalCCDC127
AceView (NCBI)CCDC127
Genatlas (Paris)CCDC127
WikiGenes133957
SOURCE (Princeton)CCDC127
Genetics Home Reference (NIH)CCDC127
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC127  -     chr5:204875-218297 -  5p15.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC127  -     5p15.33   [Description]    (hg38-Dec_2013)
EnsemblCCDC127 - 5p15.33 [CytoView hg19]  CCDC127 - 5p15.33 [CytoView hg38]
Mapping of homologs : NCBICCDC127 [Mapview hg19]  CCDC127 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098567 BC015349 HQ447398
RefSeq transcript (Entrez)NM_145265
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_033064 NT_006576 NW_004929321
Consensus coding sequences : CCDS (NCBI)CCDC127
Cluster EST : UnigeneHs.294145 [ NCBI ]
CGAP (NCI)Hs.294145
Alternative Splicing GalleryENSG00000164366
Gene ExpressionCCDC127 [ NCBI-GEO ]   CCDC127 [ EBI - ARRAY_EXPRESS ]   CCDC127 [ SEEK ]   CCDC127 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC127 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133957
GTEX Portal (Tissue expression)CCDC127
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96BQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96BQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96BQ5
Splice isoforms : SwissVarQ96BQ5
PhosPhoSitePlusQ96BQ5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC127
DMDM Disease mutations133957
Blocks (Seattle)CCDC127
SuperfamilyQ96BQ5
Human Protein AtlasENSG00000164366
Peptide AtlasQ96BQ5
HPRD14053
IPIIPI00060148   IPI00964715   
Protein Interaction databases
DIP (DOE-UCLA)Q96BQ5
IntAct (EBI)Q96BQ5
FunCoupENSG00000164366
BioGRIDCCDC127
STRING (EMBL)CCDC127
ZODIACCCDC127
Ontologies - Pathways
QuickGOQ96BQ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC127
Atlas of Cancer Signalling NetworkCCDC127
Wikipedia pathwaysCCDC127
Orthology - Evolution
OrthoDB133957
GeneTree (enSembl)ENSG00000164366
Phylogenetic Trees/Animal Genes : TreeFamCCDC127
HOVERGENQ96BQ5
HOGENOMQ96BQ5
Homologs : HomoloGeneCCDC127
Homology/Alignments : Family Browser (UCSC)CCDC127
Gene fusions - Rearrangements
Fusion : MitelmanCCDC127/TERT [5p15.33/5p15.33]  
Fusion : MitelmanDSTN/CCDC127 [20p12.1/5p15.33]  [t(5;20)(p15;p12)]  
Fusion: TCGACCDC127 5p15.33 TERT 5p15.33 GBM
Fusion: TCGADSTN 20p12.1 CCDC127 5p15.33 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC127 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC127
dbVarCCDC127
ClinVarCCDC127
1000_GenomesCCDC127 
Exome Variant ServerCCDC127
ExAC (Exome Aggregation Consortium)CCDC127 (select the gene name)
Genetic variants : HAPMAP133957
Genomic Variants (DGV)CCDC127 [DGVbeta]
DECIPHER (Syndromes)5:204875-218297  ENSG00000164366
CONAN: Copy Number AnalysisCCDC127 
Mutations
ICGC Data PortalCCDC127 
TCGA Data PortalCCDC127 
Broad Tumor PortalCCDC127
OASIS PortalCCDC127 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC127  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC127
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC127
DgiDB (Drug Gene Interaction Database)CCDC127
DoCM (Curated mutations)CCDC127 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC127 (select a term)
intoGenCCDC127
Cancer3DCCDC127(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC127
Genetic Testing Registry CCDC127
NextProtQ96BQ5 [Medical]
TSGene133957
GENETestsCCDC127
Huge Navigator CCDC127 [HugePedia]
snp3D : Map Gene to Disease133957
BioCentury BCIQCCDC127
ClinGenCCDC127
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133957
Chemical/Pharm GKB GenePA162381297
Clinical trialCCDC127
Miscellaneous
canSAR (ICR)CCDC127 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC127
EVEXCCDC127
GoPubMedCCDC127
iHOPCCDC127
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:13 CEST 2017

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