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CCDC129 (coiled-coil domain containing 129)

Identity

Alias_symbol (synonym)FLJ38344
Other alias-
HGNC (Hugo) CCDC129
LocusID (NCBI) 223075
Atlas_Id 61479
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 31514071 and ends at 31656502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AC007091.1 () / CCDC129 (7p14.3)CCDC129 (7p14.3) / CCDC129 (7p14.3)CCDC129 (7p14.3) / DEFB118 (20q11.21)
GUSB (7q11.21) / CCDC129 (7p14.3)URGCP (7p13) / CCDC129 (7p14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC129   27363
Cards
Entrez_Gene (NCBI)CCDC129  223075  coiled-coil domain containing 129
Aliases
GeneCards (Weizmann)CCDC129
Ensembl hg19 (Hinxton)ENSG00000180347 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180347 [Gene_View]  chr7:31514071-31656502 [Contig_View]  CCDC129 [Vega]
ICGC DataPortalENSG00000180347
TCGA cBioPortalCCDC129
AceView (NCBI)CCDC129
Genatlas (Paris)CCDC129
WikiGenes223075
SOURCE (Princeton)CCDC129
Genetics Home Reference (NIH)CCDC129
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC129  -     chr7:31514071-31656502 +  7p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC129  -     7p14.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC129 - 7p14.3 [CytoView hg19]  CCDC129 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBICCDC129 [Mapview hg19]  CCDC129 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095663 AK128026 AK295011 AK304387 BC132719
RefSeq transcript (Entrez)NM_001257967 NM_001257968 NM_194300
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC129
Cluster EST : UnigeneHs.224269 [ NCBI ]
CGAP (NCI)Hs.224269
Alternative Splicing GalleryENSG00000180347
Gene ExpressionCCDC129 [ NCBI-GEO ]   CCDC129 [ EBI - ARRAY_EXPRESS ]   CCDC129 [ SEEK ]   CCDC129 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC129 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)223075
GTEX Portal (Tissue expression)CCDC129
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRS4
Splice isoforms : SwissVarQ6ZRS4
PhosPhoSitePlusQ6ZRS4
Domains : Interpro (EBI)IP3R-bd    SSFA2_C   
Domain families : Pfam (Sanger)KRAP_IP3R_bind (PF14722)    SSFA2_C (PF14723)   
Domain families : Pfam (NCBI)pfam14722    pfam14723   
Domain families : Smart (EMBL)KRAP_IP3R_bind (SM01257)  
Conserved Domain (NCBI)CCDC129
DMDM Disease mutations223075
Blocks (Seattle)CCDC129
SuperfamilyQ6ZRS4
Human Protein AtlasENSG00000180347
Peptide AtlasQ6ZRS4
HPRD14137
IPIIPI00941755   IPI00375584   IPI00917698   IPI00879966   IPI01012539   IPI00916881   IPI00917322   IPI00916137   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRS4
IntAct (EBI)Q6ZRS4
FunCoupENSG00000180347
BioGRIDCCDC129
STRING (EMBL)CCDC129
ZODIACCCDC129
Ontologies - Pathways
QuickGOQ6ZRS4
Ontology : AmiGOreceptor binding  
Ontology : EGO-EBIreceptor binding  
NDEx NetworkCCDC129
Atlas of Cancer Signalling NetworkCCDC129
Wikipedia pathwaysCCDC129
Orthology - Evolution
OrthoDB223075
GeneTree (enSembl)ENSG00000180347
Phylogenetic Trees/Animal Genes : TreeFamCCDC129
HOVERGENQ6ZRS4
HOGENOMQ6ZRS4
Homologs : HomoloGeneCCDC129
Homology/Alignments : Family Browser (UCSC)CCDC129
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC129 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC129
dbVarCCDC129
ClinVarCCDC129
1000_GenomesCCDC129 
Exome Variant ServerCCDC129
ExAC (Exome Aggregation Consortium)CCDC129 (select the gene name)
Genetic variants : HAPMAP223075
Genomic Variants (DGV)CCDC129 [DGVbeta]
DECIPHERCCDC129 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC129 
Mutations
ICGC Data PortalCCDC129 
TCGA Data PortalCCDC129 
Broad Tumor PortalCCDC129
OASIS PortalCCDC129 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC129  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC129
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC129
DgiDB (Drug Gene Interaction Database)CCDC129
DoCM (Curated mutations)CCDC129 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC129 (select a term)
intoGenCCDC129
Cancer3DCCDC129(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC129
Genetic Testing Registry CCDC129
NextProtQ6ZRS4 [Medical]
TSGene223075
GENETestsCCDC129
Target ValidationCCDC129
Huge Navigator CCDC129 [HugePedia]
snp3D : Map Gene to Disease223075
BioCentury BCIQCCDC129
ClinGenCCDC129
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD223075
Chemical/Pharm GKB GenePA162381298
Clinical trialCCDC129
Miscellaneous
canSAR (ICR)CCDC129 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC129
EVEXCCDC129
GoPubMedCCDC129
iHOPCCDC129
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:02 CEST 2017

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