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CCDC13 (coiled-coil domain containing 13)

Identity

Alias_symbol (synonym)FLJ25467
Other alias-
HGNC (Hugo) CCDC13
LocusID (NCBI) 152206
Atlas_Id 61480
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42708382 and ends at 42773253 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC13   26358
Cards
Entrez_Gene (NCBI)CCDC13  152206  coiled-coil domain containing 13
Aliases
GeneCards (Weizmann)CCDC13
Ensembl hg19 (Hinxton)ENSG00000244607 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244607 [Gene_View]  chr3:42708382-42773253 [Contig_View]  CCDC13 [Vega]
ICGC DataPortalENSG00000244607
TCGA cBioPortalCCDC13
AceView (NCBI)CCDC13
Genatlas (Paris)CCDC13
WikiGenes152206
SOURCE (Princeton)CCDC13
Genetics Home Reference (NIH)CCDC13
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC13  -     chr3:42708382-42773253 -  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC13  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC13 - 3p22.1 [CytoView hg19]  CCDC13 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBICCDC13 [Mapview hg19]  CCDC13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058196 AK302859 BC036050 BM664398
RefSeq transcript (Entrez)NM_144719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC13
Cluster EST : UnigeneHs.604182 [ NCBI ]
CGAP (NCI)Hs.604182
Alternative Splicing GalleryENSG00000244607
Gene ExpressionCCDC13 [ NCBI-GEO ]   CCDC13 [ EBI - ARRAY_EXPRESS ]   CCDC13 [ SEEK ]   CCDC13 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152206
GTEX Portal (Tissue expression)CCDC13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYE1
Splice isoforms : SwissVarQ8IYE1
PhosPhoSitePlusQ8IYE1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC13
DMDM Disease mutations152206
Blocks (Seattle)CCDC13
SuperfamilyQ8IYE1
Human Protein AtlasENSG00000244607
Peptide AtlasQ8IYE1
HPRD08692
IPIIPI00065051   IPI00909896   IPI00647578   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYE1
IntAct (EBI)Q8IYE1
FunCoupENSG00000244607
BioGRIDCCDC13
STRING (EMBL)CCDC13
ZODIACCCDC13
Ontologies - Pathways
QuickGOQ8IYE1
Ontology : AmiGOprotein binding  nucleus  centrosome  cytosol  cellular response to DNA damage stimulus  cytoplasmic microtubule organization  centriolar satellite  cell projection  non-motile cilium assembly  
Ontology : EGO-EBIprotein binding  nucleus  centrosome  cytosol  cellular response to DNA damage stimulus  cytoplasmic microtubule organization  centriolar satellite  cell projection  non-motile cilium assembly  
NDEx NetworkCCDC13
Atlas of Cancer Signalling NetworkCCDC13
Wikipedia pathwaysCCDC13
Orthology - Evolution
OrthoDB152206
GeneTree (enSembl)ENSG00000244607
Phylogenetic Trees/Animal Genes : TreeFamCCDC13
HOVERGENQ8IYE1
HOGENOMQ8IYE1
Homologs : HomoloGeneCCDC13
Homology/Alignments : Family Browser (UCSC)CCDC13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC13
dbVarCCDC13
ClinVarCCDC13
1000_GenomesCCDC13 
Exome Variant ServerCCDC13
ExAC (Exome Aggregation Consortium)CCDC13 (select the gene name)
Genetic variants : HAPMAP152206
Genomic Variants (DGV)CCDC13 [DGVbeta]
DECIPHERCCDC13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC13 
Mutations
ICGC Data PortalCCDC13 
TCGA Data PortalCCDC13 
Broad Tumor PortalCCDC13
OASIS PortalCCDC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC13
DgiDB (Drug Gene Interaction Database)CCDC13
DoCM (Curated mutations)CCDC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC13 (select a term)
intoGenCCDC13
Cancer3DCCDC13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC13
Genetic Testing Registry CCDC13
NextProtQ8IYE1 [Medical]
TSGene152206
GENETestsCCDC13
Target ValidationCCDC13
Huge Navigator CCDC13 [HugePedia]
snp3D : Map Gene to Disease152206
BioCentury BCIQCCDC13
ClinGenCCDC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152206
Chemical/Pharm GKB GenePA134974073
Clinical trialCCDC13
Miscellaneous
canSAR (ICR)CCDC13 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC13
EVEXCCDC13
GoPubMedCCDC13
iHOPCCDC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:02 CEST 2017

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