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CCDC134 (coiled-coil domain containing 134)

Identity

Alias_symbol (synonym)FLJ22349
Other alias-
HGNC (Hugo) CCDC134
LocusID (NCBI) 79879
Atlas_Id 53097
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 41800622 and ends at 41826299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC134 (22q13.2) / MEI1 (22q13.2)CCDC134 22q13.2 / MEI1 22q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  CCDC134/MEI1 (22q13)


External links

Nomenclature
HGNC (Hugo)CCDC134   26185
Cards
Entrez_Gene (NCBI)CCDC134  79879  coiled-coil domain containing 134
Aliases
GeneCards (Weizmann)CCDC134
Ensembl hg19 (Hinxton)ENSG00000100147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100147 [Gene_View]  ENSG00000100147 [Sequence]  chr22:41800622-41826299 [Contig_View]  CCDC134 [Vega]
ICGC DataPortalENSG00000100147
TCGA cBioPortalCCDC134
AceView (NCBI)CCDC134
Genatlas (Paris)CCDC134
WikiGenes79879
SOURCE (Princeton)CCDC134
Genetics Home Reference (NIH)CCDC134
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC134  -     chr22:41800622-41826299 +  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC134  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC134 - 22q13.2 [CytoView hg19]  CCDC134 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBICCDC134 [Mapview hg19]  CCDC134 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026002 AK299311 BC017693 BX473493 CA420664
RefSeq transcript (Entrez)NM_001304797 NM_024821
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC134
Cluster EST : UnigeneHs.474991 [ NCBI ]
CGAP (NCI)Hs.474991
Alternative Splicing GalleryENSG00000100147
Gene ExpressionCCDC134 [ NCBI-GEO ]   CCDC134 [ EBI - ARRAY_EXPRESS ]   CCDC134 [ SEEK ]   CCDC134 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC134 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79879
GTEX Portal (Tissue expression)CCDC134
Human Protein AtlasENSG00000100147-CCDC134 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6E4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6E4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6E4
Splice isoforms : SwissVarQ9H6E4
PhosPhoSitePlusQ9H6E4
Domains : Interpro (EBI)Coiled-coil_dom_con_pro_134   
Domain families : Pfam (Sanger)ERK-JNK_inhib (PF15002)   
Domain families : Pfam (NCBI)pfam15002   
Conserved Domain (NCBI)CCDC134
DMDM Disease mutations79879
Blocks (Seattle)CCDC134
SuperfamilyQ9H6E4
Human Protein Atlas [tissue]ENSG00000100147-CCDC134 [tissue]
Peptide AtlasQ9H6E4
HPRD07988
IPIIPI00302674   IPI00893745   IPI00893350   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6E4
IntAct (EBI)Q9H6E4
FunCoupENSG00000100147
BioGRIDCCDC134
STRING (EMBL)CCDC134
ZODIACCCDC134
Ontologies - Pathways
QuickGOQ9H6E4
Ontology : AmiGOprotein binding  extracellular region  nucleus  endoplasmic reticulum  membrane  
Ontology : EGO-EBIprotein binding  extracellular region  nucleus  endoplasmic reticulum  membrane  
NDEx NetworkCCDC134
Atlas of Cancer Signalling NetworkCCDC134
Wikipedia pathwaysCCDC134
Orthology - Evolution
OrthoDB79879
GeneTree (enSembl)ENSG00000100147
Phylogenetic Trees/Animal Genes : TreeFamCCDC134
HOVERGENQ9H6E4
HOGENOMQ9H6E4
Homologs : HomoloGeneCCDC134
Homology/Alignments : Family Browser (UCSC)CCDC134
Gene fusions - Rearrangements
Fusion : MitelmanCCDC134/MEI1 [22q13.2/22q13.2]  
Fusion PortalCCDC134 22q13.2 MEI1 22q13.2 OV
Fusion : QuiverCCDC134
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC134 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC134
dbVarCCDC134
ClinVarCCDC134
1000_GenomesCCDC134 
Exome Variant ServerCCDC134
ExAC (Exome Aggregation Consortium)ENSG00000100147
GNOMAD BrowserENSG00000100147
Varsome BrowserCCDC134
Genetic variants : HAPMAP79879
Genomic Variants (DGV)CCDC134 [DGVbeta]
DECIPHERCCDC134 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC134 
Mutations
ICGC Data PortalCCDC134 
TCGA Data PortalCCDC134 
Broad Tumor PortalCCDC134
OASIS PortalCCDC134 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC134  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC134
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC134
DgiDB (Drug Gene Interaction Database)CCDC134
DoCM (Curated mutations)CCDC134 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC134 (select a term)
intoGenCCDC134
Cancer3DCCDC134(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC134
MedgenCCDC134
Genetic Testing Registry CCDC134
NextProtQ9H6E4 [Medical]
TSGene79879
GENETestsCCDC134
Target ValidationCCDC134
Huge Navigator CCDC134 [HugePedia]
snp3D : Map Gene to Disease79879
BioCentury BCIQCCDC134
ClinGenCCDC134
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79879
Chemical/Pharm GKB GenePA162381361
Clinical trialCCDC134
Miscellaneous
canSAR (ICR)CCDC134 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC134
EVEXCCDC134
GoPubMedCCDC134
iHOPCCDC134
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:56:04 CET 2018

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