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CCDC136 (coiled-coil domain containing 136)

Identity

Alias_symbol (synonym)KIAA1793
NAG6
DKFZP434G156
Other alias
HGNC (Hugo) CCDC136
LocusID (NCBI) 64753
Atlas_Id 46361
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128791410 and ends at 128822133 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUP205 (7q33) / CCDC136 (7q32.1)ZKSCAN1 (7q22.1) / CCDC136 (7q32.1)NUP205 7q33 / CCDC136 7q32.1
ZKSCAN1 7q22.1 / CCDC136 7q32.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC136   22225
Cards
Entrez_Gene (NCBI)CCDC136  64753  coiled-coil domain containing 136
AliasesNAG6
GeneCards (Weizmann)CCDC136
Ensembl hg19 (Hinxton)ENSG00000128596 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128596 [Gene_View]  chr7:128791410-128822133 [Contig_View]  CCDC136 [Vega]
ICGC DataPortalENSG00000128596
TCGA cBioPortalCCDC136
AceView (NCBI)CCDC136
Genatlas (Paris)CCDC136
WikiGenes64753
SOURCE (Princeton)CCDC136
Genetics Home Reference (NIH)CCDC136
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC136  -     chr7:128791410-128822133 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC136  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC136 - 7q32.1 [CytoView hg19]  CCDC136 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBICCDC136 [Mapview hg19]  CCDC136 [Mapview hg38]
OMIM611902   
Gene and transcription
Genbank (Entrez)AB058696 AI611323 AK023500 AK124447 AL133027
RefSeq transcript (Entrez)NM_001201372 NM_022742
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC136
Cluster EST : UnigeneHs.521178 [ NCBI ]
CGAP (NCI)Hs.521178
Alternative Splicing GalleryENSG00000128596
Gene ExpressionCCDC136 [ NCBI-GEO ]   CCDC136 [ EBI - ARRAY_EXPRESS ]   CCDC136 [ SEEK ]   CCDC136 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC136 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64753
GTEX Portal (Tissue expression)CCDC136
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JN2
Splice isoforms : SwissVarQ96JN2
PhosPhoSitePlusQ96JN2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC136
DMDM Disease mutations64753
Blocks (Seattle)CCDC136
SuperfamilyQ96JN2
Human Protein AtlasENSG00000128596
Peptide AtlasQ96JN2
HPRD10887
IPIIPI00913869   IPI00303862   IPI00446267   IPI00164066   IPI00946819   IPI00946622   IPI00947000   IPI00945029   IPI00945203   IPI00947162   
Protein Interaction databases
DIP (DOE-UCLA)Q96JN2
IntAct (EBI)Q96JN2
FunCoupENSG00000128596
BioGRIDCCDC136
STRING (EMBL)CCDC136
ZODIACCCDC136
Ontologies - Pathways
QuickGOQ96JN2
Ontology : AmiGOacrosome assembly  acrosomal membrane  spermatogenesis  single fertilization  integral component of membrane  
Ontology : EGO-EBIacrosome assembly  acrosomal membrane  spermatogenesis  single fertilization  integral component of membrane  
NDEx NetworkCCDC136
Atlas of Cancer Signalling NetworkCCDC136
Wikipedia pathwaysCCDC136
Orthology - Evolution
OrthoDB64753
GeneTree (enSembl)ENSG00000128596
Phylogenetic Trees/Animal Genes : TreeFamCCDC136
HOVERGENQ96JN2
HOGENOMQ96JN2
Homologs : HomoloGeneCCDC136
Homology/Alignments : Family Browser (UCSC)CCDC136
Gene fusions - Rearrangements
Fusion : MitelmanNUP205/CCDC136 [7q33/7q32.1]  [t(7;7)(q32;q33)]  
Fusion : MitelmanZKSCAN1/CCDC136 [7q22.1/7q32.1]  [t(7;7)(q22;q32)]  
Fusion: TCGANUP205 7q33 CCDC136 7q32.1 LUAD
Fusion: TCGAZKSCAN1 7q22.1 CCDC136 7q32.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC136 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC136
dbVarCCDC136
ClinVarCCDC136
1000_GenomesCCDC136 
Exome Variant ServerCCDC136
ExAC (Exome Aggregation Consortium)CCDC136 (select the gene name)
Genetic variants : HAPMAP64753
Genomic Variants (DGV)CCDC136 [DGVbeta]
DECIPHERCCDC136 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC136 
Mutations
ICGC Data PortalCCDC136 
TCGA Data PortalCCDC136 
Broad Tumor PortalCCDC136
OASIS PortalCCDC136 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC136  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC136
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC136
DgiDB (Drug Gene Interaction Database)CCDC136
DoCM (Curated mutations)CCDC136 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC136 (select a term)
intoGenCCDC136
Cancer3DCCDC136(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611902   
Orphanet
MedgenCCDC136
Genetic Testing Registry CCDC136
NextProtQ96JN2 [Medical]
TSGene64753
GENETestsCCDC136
Huge Navigator CCDC136 [HugePedia]
snp3D : Map Gene to Disease64753
BioCentury BCIQCCDC136
ClinGenCCDC136
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64753
Chemical/Pharm GKB GenePA162381381
Clinical trialCCDC136
Miscellaneous
canSAR (ICR)CCDC136 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC136
EVEXCCDC136
GoPubMedCCDC136
iHOPCCDC136
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:09:07 CEST 2017

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