Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC137 (coiled-coil domain containing 137)

Identity

Alias_symbol (synonym)MGC16597
Other aliasRaRF
HGNC (Hugo) CCDC137
LocusID (NCBI) 339230
Atlas_Id 61482
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81666731 and ends at 81673906 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC137 (17q25.3) / CCDC137 (17q25.3)CCDC137 (17q25.3) / RPL13AP20 (12p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC137   33451
Cards
Entrez_Gene (NCBI)CCDC137  339230  coiled-coil domain containing 137
AliasesRaRF
GeneCards (Weizmann)CCDC137
Ensembl hg19 (Hinxton)ENSG00000185298 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185298 [Gene_View]  chr17:81666731-81673906 [Contig_View]  CCDC137 [Vega]
ICGC DataPortalENSG00000185298
TCGA cBioPortalCCDC137
AceView (NCBI)CCDC137
Genatlas (Paris)CCDC137
WikiGenes339230
SOURCE (Princeton)CCDC137
Genetics Home Reference (NIH)CCDC137
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC137  -     chr17:81666731-81673906 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC137  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC137 - 17q25.3 [CytoView hg19]  CCDC137 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBICCDC137 [Mapview hg19]  CCDC137 [Mapview hg38]
OMIM614271   
Gene and transcription
Genbank (Entrez)BC009369 BC052272 BM548065 FJ649645 HQ447697
RefSeq transcript (Entrez)NM_199287
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC137
Cluster EST : UnigeneHs.744125 [ NCBI ]
CGAP (NCI)Hs.744125
Alternative Splicing GalleryENSG00000185298
Gene ExpressionCCDC137 [ NCBI-GEO ]   CCDC137 [ EBI - ARRAY_EXPRESS ]   CCDC137 [ SEEK ]   CCDC137 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC137 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339230
GTEX Portal (Tissue expression)CCDC137
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PK04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PK04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PK04
Splice isoforms : SwissVarQ6PK04
PhosPhoSitePlusQ6PK04
Domains : Interpro (EBI)CCDC137   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC137
DMDM Disease mutations339230
Blocks (Seattle)CCDC137
SuperfamilyQ6PK04
Human Protein AtlasENSG00000185298
Peptide AtlasQ6PK04
IPIIPI00401962   
Protein Interaction databases
DIP (DOE-UCLA)Q6PK04
IntAct (EBI)Q6PK04
FunCoupENSG00000185298
BioGRIDCCDC137
STRING (EMBL)CCDC137
ZODIACCCDC137
Ontologies - Pathways
QuickGOQ6PK04
Ontology : AmiGOfibrillar center  RNA binding  protein binding  chromosome  nucleolus  
Ontology : EGO-EBIfibrillar center  RNA binding  protein binding  chromosome  nucleolus  
NDEx NetworkCCDC137
Atlas of Cancer Signalling NetworkCCDC137
Wikipedia pathwaysCCDC137
Orthology - Evolution
OrthoDB339230
GeneTree (enSembl)ENSG00000185298
Phylogenetic Trees/Animal Genes : TreeFamCCDC137
HOVERGENQ6PK04
HOGENOMQ6PK04
Homologs : HomoloGeneCCDC137
Homology/Alignments : Family Browser (UCSC)CCDC137
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC137 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC137
dbVarCCDC137
ClinVarCCDC137
1000_GenomesCCDC137 
Exome Variant ServerCCDC137
ExAC (Exome Aggregation Consortium)CCDC137 (select the gene name)
Genetic variants : HAPMAP339230
Genomic Variants (DGV)CCDC137 [DGVbeta]
DECIPHERCCDC137 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC137 
Mutations
ICGC Data PortalCCDC137 
TCGA Data PortalCCDC137 
Broad Tumor PortalCCDC137
OASIS PortalCCDC137 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC137  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC137
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC137
DgiDB (Drug Gene Interaction Database)CCDC137
DoCM (Curated mutations)CCDC137 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC137 (select a term)
intoGenCCDC137
Cancer3DCCDC137(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614271   
Orphanet
MedgenCCDC137
Genetic Testing Registry CCDC137
NextProtQ6PK04 [Medical]
TSGene339230
GENETestsCCDC137
Target ValidationCCDC137
Huge Navigator CCDC137 [HugePedia]
snp3D : Map Gene to Disease339230
BioCentury BCIQCCDC137
ClinGenCCDC137
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339230
Chemical/Pharm GKB GenePA162381422
Clinical trialCCDC137
Miscellaneous
canSAR (ICR)CCDC137 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC137
EVEXCCDC137
GoPubMedCCDC137
iHOPCCDC137
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:04:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.