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CCDC138 (coiled-coil domain containing 138)

Identity

Alias (NCBI)-
HGNC (Hugo) CCDC138
HGNC Alias symbFLJ32745
LocusID (NCBI) 165055
Atlas_Id 61483
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 108786771 and ends at 108876578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC138 (2q12.3) / GFRAL (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCDC138   26531
Cards
Entrez_Gene (NCBI)CCDC138    coiled-coil domain containing 138
Aliases
GeneCards (Weizmann)CCDC138
Ensembl hg19 (Hinxton)ENSG00000163006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163006 [Gene_View]  ENSG00000163006 [Sequence]  chr2:108786771-108876578 [Contig_View]  CCDC138 [Vega]
ICGC DataPortalENSG00000163006
TCGA cBioPortalCCDC138
AceView (NCBI)CCDC138
Genatlas (Paris)CCDC138
SOURCE (Princeton)CCDC138
Genetics Home Reference (NIH)CCDC138
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC138  -     chr2:108786771-108876578 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC138  -     2q13   [Description]    (hg19-Feb_2009)
GoldenPathCCDC138 - 2q13 [CytoView hg19]  CCDC138 - 2q13 [CytoView hg38]
ImmunoBaseENSG00000163006
Genome Data Viewer NCBICCDC138 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK023150 AK057307 AK125199 BC015847 BC038421
RefSeq transcript (Entrez)NM_001303105 NM_001303106 NM_001351544 NM_001351545 NM_001351548 NM_001351549 NM_001351551 NM_001351553 NM_001351554 NM_001351555 NM_001351557 NM_001351559 NM_001351561 NM_001351565 NM_144978
Consensus coding sequences : CCDS (NCBI)CCDC138
Gene ExpressionCCDC138 [ NCBI-GEO ]   CCDC138 [ EBI - ARRAY_EXPRESS ]   CCDC138 [ SEEK ]   CCDC138 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC138 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC138 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165055
GTEX Portal (Tissue expression)CCDC138
Human Protein AtlasENSG00000163006-CCDC138 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M89
PhosPhoSitePlusQ96M89
Domains : Interpro (EBI)CCDC138   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC138
SuperfamilyQ96M89
AlphaFold pdb e-kbQ96M89   
Human Protein Atlas [tissue]ENSG00000163006-CCDC138 [tissue]
HPRD08136
Protein Interaction databases
DIP (DOE-UCLA)Q96M89
IntAct (EBI)Q96M89
BioGRIDCCDC138
STRING (EMBL)CCDC138
ZODIACCCDC138
Ontologies - Pathways
QuickGOQ96M89
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC138
Atlas of Cancer Signalling NetworkCCDC138
Wikipedia pathwaysCCDC138
Orthology - Evolution
OrthoDB165055
GeneTree (enSembl)ENSG00000163006
Phylogenetic Trees/Animal Genes : TreeFamCCDC138
Homologs : HomoloGeneCCDC138
Homology/Alignments : Family Browser (UCSC)CCDC138
Gene fusions - Rearrangements
Fusion : QuiverCCDC138
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC138 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC138
dbVarCCDC138
ClinVarCCDC138
MonarchCCDC138
1000_GenomesCCDC138 
Exome Variant ServerCCDC138
GNOMAD BrowserENSG00000163006
Varsome BrowserCCDC138
ACMGCCDC138 variants
VarityQ96M89
Genomic Variants (DGV)CCDC138 [DGVbeta]
DECIPHERCCDC138 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC138 
Mutations
ICGC Data PortalCCDC138 
TCGA Data PortalCCDC138 
Broad Tumor PortalCCDC138
OASIS PortalCCDC138 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC138  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC138
Mutations and Diseases : HGMDCCDC138
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC138
DgiDB (Drug Gene Interaction Database)CCDC138
DoCM (Curated mutations)CCDC138
CIViC (Clinical Interpretations of Variants in Cancer)CCDC138
Cancer3DCCDC138
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC138
MedgenCCDC138
Genetic Testing Registry CCDC138
NextProtQ96M89 [Medical]
GENETestsCCDC138
Target ValidationCCDC138
Huge Navigator CCDC138 [HugePedia]
ClinGenCCDC138
Clinical trials, drugs, therapy
MyCancerGenomeCCDC138
Protein Interactions : CTDCCDC138
Pharm GKB GenePA162381439
PharosQ96M89
Clinical trialCCDC138
Miscellaneous
canSAR (ICR)CCDC138
HarmonizomeCCDC138
DataMed IndexCCDC138
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC138
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:02 CEST 2021

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