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CCDC138 (coiled-coil domain containing 138)

Identity

Alias_symbol (synonym)FLJ32745
Other alias-
HGNC (Hugo) CCDC138
LocusID (NCBI) 165055
Atlas_Id 61483
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 108786750 and ends at 108876591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC138 (2q12.3) / GFRAL (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC138   26531
Cards
Entrez_Gene (NCBI)CCDC138  165055  coiled-coil domain containing 138
Aliases
GeneCards (Weizmann)CCDC138
Ensembl hg19 (Hinxton)ENSG00000163006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163006 [Gene_View]  chr2:108786750-108876591 [Contig_View]  CCDC138 [Vega]
ICGC DataPortalENSG00000163006
TCGA cBioPortalCCDC138
AceView (NCBI)CCDC138
Genatlas (Paris)CCDC138
WikiGenes165055
SOURCE (Princeton)CCDC138
Genetics Home Reference (NIH)CCDC138
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC138  -     chr2:108786750-108876591 +  2q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC138  -     2q13   [Description]    (hg19-Feb_2009)
EnsemblCCDC138 - 2q13 [CytoView hg19]  CCDC138 - 2q13 [CytoView hg38]
Mapping of homologs : NCBICCDC138 [Mapview hg19]  CCDC138 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023150 AK057307 AK125199 BC015847 BC038421
RefSeq transcript (Entrez)NM_001303105 NM_001303106 NM_144978
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC138
Cluster EST : UnigeneHs.731709 [ NCBI ]
CGAP (NCI)Hs.731709
Alternative Splicing GalleryENSG00000163006
Gene ExpressionCCDC138 [ NCBI-GEO ]   CCDC138 [ EBI - ARRAY_EXPRESS ]   CCDC138 [ SEEK ]   CCDC138 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC138 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165055
GTEX Portal (Tissue expression)CCDC138
Human Protein AtlasENSG00000163006-CCDC138 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M89
Splice isoforms : SwissVarQ96M89
PhosPhoSitePlusQ96M89
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC138
DMDM Disease mutations165055
Blocks (Seattle)CCDC138
SuperfamilyQ96M89
Human Protein Atlas [tissue]ENSG00000163006-CCDC138 [tissue]
Peptide AtlasQ96M89
HPRD08136
IPIIPI00065415   IPI00847886   IPI00917078   IPI00916151   IPI00916264   
Protein Interaction databases
DIP (DOE-UCLA)Q96M89
IntAct (EBI)Q96M89
FunCoupENSG00000163006
BioGRIDCCDC138
STRING (EMBL)CCDC138
ZODIACCCDC138
Ontologies - Pathways
QuickGOQ96M89
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC138
Atlas of Cancer Signalling NetworkCCDC138
Wikipedia pathwaysCCDC138
Orthology - Evolution
OrthoDB165055
GeneTree (enSembl)ENSG00000163006
Phylogenetic Trees/Animal Genes : TreeFamCCDC138
HOVERGENQ96M89
HOGENOMQ96M89
Homologs : HomoloGeneCCDC138
Homology/Alignments : Family Browser (UCSC)CCDC138
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC138
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC138 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC138
dbVarCCDC138
ClinVarCCDC138
1000_GenomesCCDC138 
Exome Variant ServerCCDC138
ExAC (Exome Aggregation Consortium)ENSG00000163006
GNOMAD BrowserENSG00000163006
Genetic variants : HAPMAP165055
Genomic Variants (DGV)CCDC138 [DGVbeta]
DECIPHERCCDC138 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC138 
Mutations
ICGC Data PortalCCDC138 
TCGA Data PortalCCDC138 
Broad Tumor PortalCCDC138
OASIS PortalCCDC138 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC138  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC138
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC138
DgiDB (Drug Gene Interaction Database)CCDC138
DoCM (Curated mutations)CCDC138 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC138 (select a term)
intoGenCCDC138
Cancer3DCCDC138(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC138
MedgenCCDC138
Genetic Testing Registry CCDC138
NextProtQ96M89 [Medical]
TSGene165055
GENETestsCCDC138
Target ValidationCCDC138
Huge Navigator CCDC138 [HugePedia]
snp3D : Map Gene to Disease165055
BioCentury BCIQCCDC138
ClinGenCCDC138
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165055
Chemical/Pharm GKB GenePA162381439
Clinical trialCCDC138
Miscellaneous
canSAR (ICR)CCDC138 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC138
EVEXCCDC138
GoPubMedCCDC138
iHOPCCDC138
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:07 CET 2017

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