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CCDC140 (coiled-coil domain containing 140)

Identity

Alias_symbol (synonym)FLJ32447
Other alias-
HGNC (Hugo) CCDC140
LocusID (NCBI) 151278
Atlas_Id 61486
Location 2q36.1  [Link to chromosome band 2q36]
Location_base_pair Starts at 222298147 and ends at 222305217 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC140   26514
Cards
Entrez_Gene (NCBI)CCDC140  151278  coiled-coil domain containing 140
Aliases
GeneCards (Weizmann)CCDC140
Ensembl hg19 (Hinxton)ENSG00000163081 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163081 [Gene_View]  chr2:222298147-222305217 [Contig_View]  CCDC140 [Vega]
ICGC DataPortalENSG00000163081
TCGA cBioPortalCCDC140
AceView (NCBI)CCDC140
Genatlas (Paris)CCDC140
WikiGenes151278
SOURCE (Princeton)CCDC140
Genetics Home Reference (NIH)CCDC140
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC140  -     chr2:222298147-222305217 +  2q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC140  -     2q36.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC140 - 2q36.1 [CytoView hg19]  CCDC140 - 2q36.1 [CytoView hg38]
Mapping of homologs : NCBICCDC140 [Mapview hg19]  CCDC140 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057009 BC109388
RefSeq transcript (Entrez)NM_153038
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC140
Cluster EST : UnigeneHs.350729 [ NCBI ]
CGAP (NCI)Hs.350729
Alternative Splicing GalleryENSG00000163081
Gene ExpressionCCDC140 [ NCBI-GEO ]   CCDC140 [ EBI - ARRAY_EXPRESS ]   CCDC140 [ SEEK ]   CCDC140 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC140 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151278
GTEX Portal (Tissue expression)CCDC140
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MF4
Splice isoforms : SwissVarQ96MF4
PhosPhoSitePlusQ96MF4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC140
DMDM Disease mutations151278
Blocks (Seattle)CCDC140
SuperfamilyQ96MF4
Human Protein AtlasENSG00000163081
Peptide AtlasQ96MF4
HPRD08132
IPIIPI00065493   IPI00917501   
Protein Interaction databases
DIP (DOE-UCLA)Q96MF4
IntAct (EBI)Q96MF4
FunCoupENSG00000163081
BioGRIDCCDC140
STRING (EMBL)CCDC140
ZODIACCCDC140
Ontologies - Pathways
QuickGOQ96MF4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC140
Atlas of Cancer Signalling NetworkCCDC140
Wikipedia pathwaysCCDC140
Orthology - Evolution
OrthoDB151278
GeneTree (enSembl)ENSG00000163081
Phylogenetic Trees/Animal Genes : TreeFamCCDC140
HOVERGENQ96MF4
HOGENOMQ96MF4
Homologs : HomoloGeneCCDC140
Homology/Alignments : Family Browser (UCSC)CCDC140
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC140 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC140
dbVarCCDC140
ClinVarCCDC140
1000_GenomesCCDC140 
Exome Variant ServerCCDC140
ExAC (Exome Aggregation Consortium)CCDC140 (select the gene name)
Genetic variants : HAPMAP151278
Genomic Variants (DGV)CCDC140 [DGVbeta]
DECIPHERCCDC140 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC140 
Mutations
ICGC Data PortalCCDC140 
TCGA Data PortalCCDC140 
Broad Tumor PortalCCDC140
OASIS PortalCCDC140 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC140  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC140
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC140
DgiDB (Drug Gene Interaction Database)CCDC140
DoCM (Curated mutations)CCDC140 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC140 (select a term)
intoGenCCDC140
Cancer3DCCDC140(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC140
Genetic Testing Registry CCDC140
NextProtQ96MF4 [Medical]
TSGene151278
GENETestsCCDC140
Target ValidationCCDC140
Huge Navigator CCDC140 [HugePedia]
snp3D : Map Gene to Disease151278
BioCentury BCIQCCDC140
ClinGenCCDC140
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151278
Chemical/Pharm GKB GenePA162381440
Clinical trialCCDC140
Miscellaneous
canSAR (ICR)CCDC140 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC140
EVEXCCDC140
GoPubMedCCDC140
iHOPCCDC140
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:03 CEST 2017

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