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CCDC141 (coiled-coil domain containing 141)

Identity

Alias_symbol (synonym)FLJ39502
CAMDI
Other alias
HGNC (Hugo) CCDC141
LocusID (NCBI) 285025
Atlas_Id 61487
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 178873021 and ends at 179050059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC141 (2q31.2) / GMPS (3q25.31)CCDC141 (2q31.2) / PALM2-AKAP2 (9q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC141   26821
Cards
Entrez_Gene (NCBI)CCDC141  285025  coiled-coil domain containing 141
AliasesCAMDI
GeneCards (Weizmann)CCDC141
Ensembl hg19 (Hinxton)ENSG00000163492 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163492 [Gene_View]  chr2:178873021-179050059 [Contig_View]  CCDC141 [Vega]
ICGC DataPortalENSG00000163492
TCGA cBioPortalCCDC141
AceView (NCBI)CCDC141
Genatlas (Paris)CCDC141
WikiGenes285025
SOURCE (Princeton)CCDC141
Genetics Home Reference (NIH)CCDC141
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC141  -     chr2:178873021-179050059 -  2q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC141  -     2q31.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC141 - 2q31.2 [CytoView hg19]  CCDC141 - 2q31.2 [CytoView hg38]
Mapping of homologs : NCBICCDC141 [Mapview hg19]  CCDC141 [Mapview hg38]
OMIM146110   616031   
Gene and transcription
Genbank (Entrez)AK096821 AK129847 AL832777 BC087856 BC108697
RefSeq transcript (Entrez)NM_001316745 NM_173648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC141
Cluster EST : UnigeneHs.324341 [ NCBI ]
CGAP (NCI)Hs.324341
Alternative Splicing GalleryENSG00000163492
Gene ExpressionCCDC141 [ NCBI-GEO ]   CCDC141 [ EBI - ARRAY_EXPRESS ]   CCDC141 [ SEEK ]   CCDC141 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC141 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285025
GTEX Portal (Tissue expression)CCDC141
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZP82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZP82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZP82
Splice isoforms : SwissVarQ6ZP82
PhosPhoSitePlusQ6ZP82
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Spectrin_repeat   
Domain families : Pfam (Sanger)Spectrin (PF00435)   
Domain families : Pfam (NCBI)pfam00435   
Conserved Domain (NCBI)CCDC141
DMDM Disease mutations285025
Blocks (Seattle)CCDC141
SuperfamilyQ6ZP82
Human Protein AtlasENSG00000163492
Peptide AtlasQ6ZP82
HPRD08257
IPIIPI00414122   IPI00167476   IPI00916182   IPI00917610   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZP82
IntAct (EBI)Q6ZP82
FunCoupENSG00000163492
BioGRIDCCDC141
STRING (EMBL)CCDC141
ZODIACCCDC141
Ontologies - Pathways
QuickGOQ6ZP82
Ontology : AmiGOprotein binding  cytoplasm  microtubule organizing center  
Ontology : EGO-EBIprotein binding  cytoplasm  microtubule organizing center  
NDEx NetworkCCDC141
Atlas of Cancer Signalling NetworkCCDC141
Wikipedia pathwaysCCDC141
Orthology - Evolution
OrthoDB285025
GeneTree (enSembl)ENSG00000163492
Phylogenetic Trees/Animal Genes : TreeFamCCDC141
HOVERGENQ6ZP82
HOGENOMQ6ZP82
Homologs : HomoloGeneCCDC141
Homology/Alignments : Family Browser (UCSC)CCDC141
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC141 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC141
dbVarCCDC141
ClinVarCCDC141
1000_GenomesCCDC141 
Exome Variant ServerCCDC141
ExAC (Exome Aggregation Consortium)CCDC141 (select the gene name)
Genetic variants : HAPMAP285025
Genomic Variants (DGV)CCDC141 [DGVbeta]
DECIPHERCCDC141 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC141 
Mutations
ICGC Data PortalCCDC141 
TCGA Data PortalCCDC141 
Broad Tumor PortalCCDC141
OASIS PortalCCDC141 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC141  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC141
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC141
DgiDB (Drug Gene Interaction Database)CCDC141
DoCM (Curated mutations)CCDC141 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC141 (select a term)
intoGenCCDC141
Cancer3DCCDC141(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146110    616031   
Orphanet
MedgenCCDC141
Genetic Testing Registry CCDC141
NextProtQ6ZP82 [Medical]
TSGene285025
GENETestsCCDC141
Target ValidationCCDC141
Huge Navigator CCDC141 [HugePedia]
snp3D : Map Gene to Disease285025
BioCentury BCIQCCDC141
ClinGenCCDC141
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285025
Chemical/Pharm GKB GenePA162381449
Clinical trialCCDC141
Miscellaneous
canSAR (ICR)CCDC141 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC141
EVEXCCDC141
GoPubMedCCDC141
iHOPCCDC141
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:03 CEST 2017

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