Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC142 (coiled-coil domain containing 142)

Identity

Alias_symbol (synonym)FLJ14397
Other alias-
HGNC (Hugo) CCDC142
LocusID (NCBI) 84865
Atlas_Id 61488
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74472832 and ends at 74483230 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC142 (2p13.1) / LAMA2 (6q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC142   25889
Cards
Entrez_Gene (NCBI)CCDC142  84865  coiled-coil domain containing 142
Aliases
GeneCards (Weizmann)CCDC142
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:74472832-74483230 [Contig_View]  CCDC142 [Vega]
TCGA cBioPortalCCDC142
AceView (NCBI)CCDC142
Genatlas (Paris)CCDC142
WikiGenes84865
SOURCE (Princeton)CCDC142
Genetics Home Reference (NIH)CCDC142
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC142  -     chr2:74472832-74483230 -  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC142  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC142 - 2p13.1 [CytoView hg19]  CCDC142 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBICCDC142 [Mapview hg19]  CCDC142 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027303 AK075543 BC117269 BC143398 BC143399
RefSeq transcript (Entrez)NM_032779
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC142
Cluster EST : UnigeneHs.430199 [ NCBI ]
CGAP (NCI)Hs.430199
Gene ExpressionCCDC142 [ NCBI-GEO ]   CCDC142 [ EBI - ARRAY_EXPRESS ]   CCDC142 [ SEEK ]   CCDC142 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC142 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84865
GTEX Portal (Tissue expression)CCDC142
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RM4
Splice isoforms : SwissVarQ17RM4
PhosPhoSitePlusQ17RM4
Domains : Interpro (EBI)CCDC142   
Domain families : Pfam (Sanger)CCDC142 (PF14923)   
Domain families : Pfam (NCBI)pfam14923   
Conserved Domain (NCBI)CCDC142
DMDM Disease mutations84865
Blocks (Seattle)CCDC142
SuperfamilyQ17RM4
Peptide AtlasQ17RM4
HPRD08598
IPIIPI00301116   IPI00871697   IPI00847422   
Protein Interaction databases
DIP (DOE-UCLA)Q17RM4
IntAct (EBI)Q17RM4
BioGRIDCCDC142
STRING (EMBL)CCDC142
ZODIACCCDC142
Ontologies - Pathways
QuickGOQ17RM4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC142
Atlas of Cancer Signalling NetworkCCDC142
Wikipedia pathwaysCCDC142
Orthology - Evolution
OrthoDB84865
Phylogenetic Trees/Animal Genes : TreeFamCCDC142
HOVERGENQ17RM4
HOGENOMQ17RM4
Homologs : HomoloGeneCCDC142
Homology/Alignments : Family Browser (UCSC)CCDC142
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC142 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC142
dbVarCCDC142
ClinVarCCDC142
1000_GenomesCCDC142 
Exome Variant ServerCCDC142
ExAC (Exome Aggregation Consortium)CCDC142 (select the gene name)
Genetic variants : HAPMAP84865
Genomic Variants (DGV)CCDC142 [DGVbeta]
DECIPHERCCDC142 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC142 
Mutations
ICGC Data PortalCCDC142 
TCGA Data PortalCCDC142 
Broad Tumor PortalCCDC142
OASIS PortalCCDC142 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC142  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC142
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC142
DgiDB (Drug Gene Interaction Database)CCDC142
DoCM (Curated mutations)CCDC142 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC142 (select a term)
intoGenCCDC142
Cancer3DCCDC142(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC142
Genetic Testing Registry CCDC142
NextProtQ17RM4 [Medical]
TSGene84865
GENETestsCCDC142
Target ValidationCCDC142
Huge Navigator CCDC142 [HugePedia]
snp3D : Map Gene to Disease84865
BioCentury BCIQCCDC142
ClinGenCCDC142
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84865
Chemical/Pharm GKB GenePA162381450
Clinical trialCCDC142
Miscellaneous
canSAR (ICR)CCDC142 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC142
EVEXCCDC142
GoPubMedCCDC142
iHOPCCDC142
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.