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CCDC144A (coiled-coil domain containing 144A)

Identity

Alias_symbol (synonym)KIAA0565
FLJ43983
Other alias-
HGNC (Hugo) CCDC144A
LocusID (NCBI) 9720
Atlas_Id 61489
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 16690325 and ends at 16774999 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TAOK1 (17q11.2) / CCDC144A (17p11.2)ZZEF1 (17p13.2) / CCDC144A (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC144A   29072
Cards
Entrez_Gene (NCBI)CCDC144A  9720  coiled-coil domain containing 144A
Aliases
GeneCards (Weizmann)CCDC144A
Ensembl hg19 (Hinxton)ENSG00000170160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170160 [Gene_View]  chr17:16690325-16774999 [Contig_View]  CCDC144A [Vega]
ICGC DataPortalENSG00000170160
TCGA cBioPortalCCDC144A
AceView (NCBI)CCDC144A
Genatlas (Paris)CCDC144A
WikiGenes9720
SOURCE (Princeton)CCDC144A
Genetics Home Reference (NIH)CCDC144A
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC144A  -     chr17:16690325-16774999 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC144A  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC144A - 17p11.2 [CytoView hg19]  CCDC144A - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBICCDC144A [Mapview hg19]  CCDC144A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB011137 AK125971 BC133019 BC144224 BC144225
RefSeq transcript (Entrez)NM_014695
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC144A
Cluster EST : UnigeneHs.745246 [ NCBI ]
CGAP (NCI)Hs.745246
Alternative Splicing GalleryENSG00000170160
Gene ExpressionCCDC144A [ NCBI-GEO ]   CCDC144A [ EBI - ARRAY_EXPRESS ]   CCDC144A [ SEEK ]   CCDC144A [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC144A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9720
GTEX Portal (Tissue expression)CCDC144A
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RUR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RUR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RUR9
Splice isoforms : SwissVarA2RUR9
PhosPhoSitePlusA2RUR9
Domains : Interpro (EBI)DUF3496   
Domain families : Pfam (Sanger)DUF3496 (PF12001)   
Domain families : Pfam (NCBI)pfam12001   
Conserved Domain (NCBI)CCDC144A
DMDM Disease mutations9720
Blocks (Seattle)CCDC144A
SuperfamilyA2RUR9
Human Protein AtlasENSG00000170160
Peptide AtlasA2RUR9
IPIIPI00479279   IPI01009978   IPI00334492   IPI00478420   IPI01018816   IPI00981845   IPI00792540   IPI00793233   
Protein Interaction databases
DIP (DOE-UCLA)A2RUR9
IntAct (EBI)A2RUR9
FunCoupENSG00000170160
BioGRIDCCDC144A
STRING (EMBL)CCDC144A
ZODIACCCDC144A
Ontologies - Pathways
QuickGOA2RUR9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC144A
Atlas of Cancer Signalling NetworkCCDC144A
Wikipedia pathwaysCCDC144A
Orthology - Evolution
OrthoDB9720
GeneTree (enSembl)ENSG00000170160
Phylogenetic Trees/Animal Genes : TreeFamCCDC144A
HOVERGENA2RUR9
HOGENOMA2RUR9
Homologs : HomoloGeneCCDC144A
Homology/Alignments : Family Browser (UCSC)CCDC144A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC144A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC144A
dbVarCCDC144A
ClinVarCCDC144A
1000_GenomesCCDC144A 
Exome Variant ServerCCDC144A
ExAC (Exome Aggregation Consortium)CCDC144A (select the gene name)
Genetic variants : HAPMAP9720
Genomic Variants (DGV)CCDC144A [DGVbeta]
DECIPHERCCDC144A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC144A 
Mutations
ICGC Data PortalCCDC144A 
TCGA Data PortalCCDC144A 
Broad Tumor PortalCCDC144A
OASIS PortalCCDC144A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC144A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC144A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC144A
DgiDB (Drug Gene Interaction Database)CCDC144A
DoCM (Curated mutations)CCDC144A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC144A (select a term)
intoGenCCDC144A
Cancer3DCCDC144A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC144A
Genetic Testing Registry CCDC144A
NextProtA2RUR9 [Medical]
TSGene9720
GENETestsCCDC144A
Target ValidationCCDC144A
Huge Navigator CCDC144A [HugePedia]
snp3D : Map Gene to Disease9720
BioCentury BCIQCCDC144A
ClinGenCCDC144A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9720
Chemical/Pharm GKB GenePA162381473
Clinical trialCCDC144A
Miscellaneous
canSAR (ICR)CCDC144A (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC144A
EVEXCCDC144A
GoPubMedCCDC144A
iHOPCCDC144A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:24 CEST 2017

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