Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC144B (coiled-coil domain containing 144B (pseudogene))

Identity

Alias_namescoiled-coil domain containing 144B
Alias_symbol (synonym)FLJ36492
Other alias-
HGNC (Hugo) CCDC144B
LocusID (NCBI) 284047
Atlas_Id 61490
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18441115 and ends at 18528930 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC144B (17p11.2) / PRPSAP2 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC144B   26704
Cards
Entrez_Gene (NCBI)CCDC144B  284047  coiled-coil domain containing 144B (pseudogene)
Aliases
GeneCards (Weizmann)CCDC144B
Ensembl hg19 (Hinxton)ENSG00000154874 [Gene_View]  chr17:18441115-18528930 [Contig_View]  CCDC144B [Vega]
Ensembl hg38 (Hinxton)ENSG00000154874 [Gene_View]  chr17:18441115-18528930 [Contig_View]  CCDC144B [Vega]
ICGC DataPortalENSG00000154874
TCGA cBioPortalCCDC144B
AceView (NCBI)CCDC144B
Genatlas (Paris)CCDC144B
WikiGenes284047
SOURCE (Princeton)CCDC144B
Genetics Home Reference (NIH)CCDC144B
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC144B  -     chr17:18441115-18528930 -  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC144B  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblCCDC144B - 17p11.2 [CytoView hg19]  CCDC144B - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBICCDC144B [Mapview hg19]  CCDC144B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093811 BC062767 BC101585 BC104815 BC143561
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)CCDC144B
Cluster EST : UnigeneHs.745246 [ NCBI ]
CGAP (NCI)Hs.745246
Alternative Splicing GalleryENSG00000154874
Gene ExpressionCCDC144B [ NCBI-GEO ]   CCDC144B [ EBI - ARRAY_EXPRESS ]   CCDC144B [ SEEK ]   CCDC144B [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC144B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284047
GTEX Portal (Tissue expression)CCDC144B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MJ40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MJ40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MJ40
Splice isoforms : SwissVarQ3MJ40
PhosPhoSitePlusQ3MJ40
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC144B
DMDM Disease mutations284047
Blocks (Seattle)CCDC144B
SuperfamilyQ3MJ40
Human Protein AtlasENSG00000154874
Peptide AtlasQ3MJ40
HPRD08777
IPIIPI00295898   IPI00876839   
Protein Interaction databases
DIP (DOE-UCLA)Q3MJ40
IntAct (EBI)Q3MJ40
FunCoupENSG00000154874
BioGRIDCCDC144B
STRING (EMBL)CCDC144B
ZODIACCCDC144B
Ontologies - Pathways
QuickGOQ3MJ40
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC144B
Atlas of Cancer Signalling NetworkCCDC144B
Wikipedia pathwaysCCDC144B
Orthology - Evolution
OrthoDB284047
GeneTree (enSembl)ENSG00000154874
Phylogenetic Trees/Animal Genes : TreeFamCCDC144B
HOVERGENQ3MJ40
HOGENOMQ3MJ40
Homologs : HomoloGeneCCDC144B
Homology/Alignments : Family Browser (UCSC)CCDC144B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC144B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC144B
dbVarCCDC144B
ClinVarCCDC144B
1000_GenomesCCDC144B 
Exome Variant ServerCCDC144B
ExAC (Exome Aggregation Consortium)CCDC144B (select the gene name)
Genetic variants : HAPMAP284047
Genomic Variants (DGV)CCDC144B [DGVbeta]
DECIPHER (Syndromes)17:18441115-18528930  ENSG00000154874
CONAN: Copy Number AnalysisCCDC144B 
Mutations
ICGC Data PortalCCDC144B 
TCGA Data PortalCCDC144B 
Broad Tumor PortalCCDC144B
OASIS PortalCCDC144B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC144B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC144B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC144B
DgiDB (Drug Gene Interaction Database)CCDC144B
DoCM (Curated mutations)CCDC144B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC144B (select a term)
intoGenCCDC144B
Cancer3DCCDC144B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC144B
Genetic Testing Registry CCDC144B
NextProtQ3MJ40 [Medical]
TSGene284047
GENETestsCCDC144B
Huge Navigator CCDC144B [HugePedia]
snp3D : Map Gene to Disease284047
BioCentury BCIQCCDC144B
ClinGenCCDC144B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284047
Chemical/Pharm GKB GenePA162381474
Clinical trialCCDC144B
Miscellaneous
canSAR (ICR)CCDC144B (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC144B
EVEXCCDC144B
GoPubMedCCDC144B
iHOPCCDC144B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:23 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.