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CCDC144CP (coiled-coil domain containing 144C, pseudogene)

Identity

Alias_namesCCDC144C
coiled-coil domain containing 144C
Other alias
HGNC (Hugo) CCDC144CP
LocusID (NCBI) 348254
Atlas_Id 61491
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 20321174 and ends at 20402191 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AHR (7p21.1) / CCDC144CP (17p11.2)CFAP53 (18q21.1) / CCDC144CP (17p11.2)FLCN (17p11.2) / CCDC144CP (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC144CP   29073
Cards
Entrez_Gene (NCBI)CCDC144CP  348254  coiled-coil domain containing 144C, pseudogene
AliasesCCDC144C
GeneCards (Weizmann)CCDC144CP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:20321174-20402191 [Contig_View]  CCDC144CP [Vega]
TCGA cBioPortalCCDC144CP
AceView (NCBI)CCDC144CP
Genatlas (Paris)CCDC144CP
WikiGenes348254
SOURCE (Princeton)CCDC144CP
Genetics Home Reference (NIH)CCDC144CP
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC144CP  -     chr17:20321174-20402191 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC144CP  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC144CP - 17p11.2 [CytoView hg19]  CCDC144CP - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBICCDC144CP [Mapview hg19]  CCDC144CP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK295707 AL162090 AL162091 BC036241 DA321951
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC144CP
Cluster EST : UnigeneHs.462475 [ NCBI ]
CGAP (NCI)Hs.462475
Gene ExpressionCCDC144CP [ NCBI-GEO ]   CCDC144CP [ EBI - ARRAY_EXPRESS ]   CCDC144CP [ SEEK ]   CCDC144CP [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC144CP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348254
GTEX Portal (Tissue expression)CCDC144CP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYA2
Splice isoforms : SwissVarQ8IYA2
PhosPhoSitePlusQ8IYA2
Domains : Interpro (EBI)DUF3496   
Domain families : Pfam (Sanger)DUF3496 (PF12001)   
Domain families : Pfam (NCBI)pfam12001   
Conserved Domain (NCBI)CCDC144CP
DMDM Disease mutations348254
Blocks (Seattle)CCDC144CP
SuperfamilyQ8IYA2
Peptide AtlasQ8IYA2
Protein Interaction databases
DIP (DOE-UCLA)Q8IYA2
IntAct (EBI)Q8IYA2
BioGRIDCCDC144CP
STRING (EMBL)CCDC144CP
ZODIACCCDC144CP
Ontologies - Pathways
QuickGOQ8IYA2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC144CP
Atlas of Cancer Signalling NetworkCCDC144CP
Wikipedia pathwaysCCDC144CP
Orthology - Evolution
OrthoDB348254
Phylogenetic Trees/Animal Genes : TreeFamCCDC144CP
HOVERGENQ8IYA2
HOGENOMQ8IYA2
Homologs : HomoloGeneCCDC144CP
Homology/Alignments : Family Browser (UCSC)CCDC144CP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC144CP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC144CP
dbVarCCDC144CP
ClinVarCCDC144CP
1000_GenomesCCDC144CP 
Exome Variant ServerCCDC144CP
ExAC (Exome Aggregation Consortium)CCDC144CP (select the gene name)
Genetic variants : HAPMAP348254
Genomic Variants (DGV)CCDC144CP [DGVbeta]
DECIPHERCCDC144CP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC144CP 
Mutations
ICGC Data PortalCCDC144CP 
TCGA Data PortalCCDC144CP 
Broad Tumor PortalCCDC144CP
OASIS PortalCCDC144CP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC144CP
BioMutasearch CCDC144CP
DgiDB (Drug Gene Interaction Database)CCDC144CP
DoCM (Curated mutations)CCDC144CP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC144CP (select a term)
intoGenCCDC144CP
Cancer3DCCDC144CP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC144CP
Genetic Testing Registry CCDC144CP
NextProtQ8IYA2 [Medical]
TSGene348254
GENETestsCCDC144CP
Target ValidationCCDC144CP
Huge Navigator CCDC144CP [HugePedia]
snp3D : Map Gene to Disease348254
BioCentury BCIQCCDC144CP
ClinGenCCDC144CP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348254
Clinical trialCCDC144CP
Miscellaneous
canSAR (ICR)CCDC144CP (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC144CP
EVEXCCDC144CP
GoPubMedCCDC144CP
iHOPCCDC144CP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:04 CEST 2017

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