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CCDC144NL (coiled-coil domain containing 144 family, N-terminal like)

Identity

Alias_symbol (synonym)MGC87631
Other alias-
HGNC (Hugo) CCDC144NL
LocusID (NCBI) 339184
Atlas_Id 61492
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 20863395 and ends at 20896140 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC144NL   33735
Cards
Entrez_Gene (NCBI)CCDC144NL  339184  coiled-coil domain containing 144 family, N-terminal like
Aliases
GeneCards (Weizmann)CCDC144NL
Ensembl hg19 (Hinxton)ENSG00000205212 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205212 [Gene_View]  chr17:20863395-20896140 [Contig_View]  CCDC144NL [Vega]
ICGC DataPortalENSG00000205212
TCGA cBioPortalCCDC144NL
AceView (NCBI)CCDC144NL
Genatlas (Paris)CCDC144NL
WikiGenes339184
SOURCE (Princeton)CCDC144NL
Genetics Home Reference (NIH)CCDC144NL
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC144NL  -     chr17:20863395-20896140 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC144NL  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC144NL - 17p11.2 [CytoView hg19]  CCDC144NL - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBICCDC144NL [Mapview hg19]  CCDC144NL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW504417 BC068597
RefSeq transcript (Entrez)NM_001004306
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC144NL
Cluster EST : UnigeneHs.674830 [ NCBI ]
CGAP (NCI)Hs.674830
Alternative Splicing GalleryENSG00000205212
Gene ExpressionCCDC144NL [ NCBI-GEO ]   CCDC144NL [ EBI - ARRAY_EXPRESS ]   CCDC144NL [ SEEK ]   CCDC144NL [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC144NL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339184
GTEX Portal (Tissue expression)CCDC144NL
Human Protein AtlasENSG00000205212-CCDC144NL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUI1
Splice isoforms : SwissVarQ6NUI1
PhosPhoSitePlusQ6NUI1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC144NL
DMDM Disease mutations339184
Blocks (Seattle)CCDC144NL
SuperfamilyQ6NUI1
Human Protein Atlas [tissue]ENSG00000205212-CCDC144NL [tissue]
Peptide AtlasQ6NUI1
HPRD17572
IPIIPI00242921   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUI1
IntAct (EBI)Q6NUI1
FunCoupENSG00000205212
BioGRIDCCDC144NL
STRING (EMBL)CCDC144NL
ZODIACCCDC144NL
Ontologies - Pathways
QuickGOQ6NUI1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC144NL
Atlas of Cancer Signalling NetworkCCDC144NL
Wikipedia pathwaysCCDC144NL
Orthology - Evolution
OrthoDB339184
GeneTree (enSembl)ENSG00000205212
Phylogenetic Trees/Animal Genes : TreeFamCCDC144NL
HOVERGENQ6NUI1
HOGENOMQ6NUI1
Homologs : HomoloGeneCCDC144NL
Homology/Alignments : Family Browser (UCSC)CCDC144NL
Gene fusions - Rearrangements
Fusion: Tumor Portal CCDC144NL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC144NL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC144NL
dbVarCCDC144NL
ClinVarCCDC144NL
1000_GenomesCCDC144NL 
Exome Variant ServerCCDC144NL
ExAC (Exome Aggregation Consortium)ENSG00000205212
GNOMAD BrowserENSG00000205212
Genetic variants : HAPMAP339184
Genomic Variants (DGV)CCDC144NL [DGVbeta]
DECIPHERCCDC144NL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC144NL 
Mutations
ICGC Data PortalCCDC144NL 
TCGA Data PortalCCDC144NL 
Broad Tumor PortalCCDC144NL
OASIS PortalCCDC144NL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC144NL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC144NL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC144NL
DgiDB (Drug Gene Interaction Database)CCDC144NL
DoCM (Curated mutations)CCDC144NL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC144NL (select a term)
intoGenCCDC144NL
Cancer3DCCDC144NL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC144NL
Genetic Testing Registry CCDC144NL
NextProtQ6NUI1 [Medical]
TSGene339184
GENETestsCCDC144NL
Target ValidationCCDC144NL
Huge Navigator CCDC144NL [HugePedia]
snp3D : Map Gene to Disease339184
BioCentury BCIQCCDC144NL
ClinGenCCDC144NL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339184
Chemical/Pharm GKB GenePA164717677
Clinical trialCCDC144NL
Miscellaneous
canSAR (ICR)CCDC144NL (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC144NL
EVEXCCDC144NL
GoPubMedCCDC144NL
iHOPCCDC144NL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:41:34 CET 2017

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