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CCDC146 (coiled-coil domain containing 146)

Identity

Alias_symbol (synonym)KIAA1505
Other alias-
HGNC (Hugo) CCDC146
LocusID (NCBI) 57639
Atlas_Id 61494
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 76751934 and ends at 76924521 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC146 (7q11.23) / EPB41L4B (9q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC146   29296
Cards
Entrez_Gene (NCBI)CCDC146  57639  coiled-coil domain containing 146
Aliases
GeneCards (Weizmann)CCDC146
Ensembl hg19 (Hinxton)ENSG00000135205 [Gene_View]  chr7:76751934-76924521 [Contig_View]  CCDC146 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135205 [Gene_View]  chr7:76751934-76924521 [Contig_View]  CCDC146 [Vega]
ICGC DataPortalENSG00000135205
TCGA cBioPortalCCDC146
AceView (NCBI)CCDC146
Genatlas (Paris)CCDC146
WikiGenes57639
SOURCE (Princeton)CCDC146
Genetics Home Reference (NIH)CCDC146
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC146  -     chr7:76751934-76924521 +  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC146  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblCCDC146 - 7q11.23 [CytoView hg19]  CCDC146 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBICCDC146 [Mapview hg19]  CCDC146 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040938 AF461817 AK056542 AK292491 BC029458
RefSeq transcript (Entrez)NM_020879
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)CCDC146
Cluster EST : UnigeneHs.113940 [ NCBI ]
CGAP (NCI)Hs.113940
Alternative Splicing GalleryENSG00000135205
Gene ExpressionCCDC146 [ NCBI-GEO ]   CCDC146 [ EBI - ARRAY_EXPRESS ]   CCDC146 [ SEEK ]   CCDC146 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC146 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57639
GTEX Portal (Tissue expression)CCDC146
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYE0
Splice isoforms : SwissVarQ8IYE0
PhosPhoSitePlusQ8IYE0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC146
DMDM Disease mutations57639
Blocks (Seattle)CCDC146
SuperfamilyQ8IYE0
Human Protein AtlasENSG00000135205
Peptide AtlasQ8IYE0
HPRD11150
IPIIPI00885204   IPI00410188   IPI00926063   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYE0
IntAct (EBI)Q8IYE0
FunCoupENSG00000135205
BioGRIDCCDC146
STRING (EMBL)CCDC146
ZODIACCCDC146
Ontologies - Pathways
QuickGOQ8IYE0
Ontology : AmiGOprotein binding  centriole  
Ontology : EGO-EBIprotein binding  centriole  
NDEx NetworkCCDC146
Atlas of Cancer Signalling NetworkCCDC146
Wikipedia pathwaysCCDC146
Orthology - Evolution
OrthoDB57639
GeneTree (enSembl)ENSG00000135205
Phylogenetic Trees/Animal Genes : TreeFamCCDC146
HOVERGENQ8IYE0
HOGENOMQ8IYE0
Homologs : HomoloGeneCCDC146
Homology/Alignments : Family Browser (UCSC)CCDC146
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC146 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC146
dbVarCCDC146
ClinVarCCDC146
1000_GenomesCCDC146 
Exome Variant ServerCCDC146
ExAC (Exome Aggregation Consortium)CCDC146 (select the gene name)
Genetic variants : HAPMAP57639
Genomic Variants (DGV)CCDC146 [DGVbeta]
DECIPHER (Syndromes)7:76751934-76924521  ENSG00000135205
CONAN: Copy Number AnalysisCCDC146 
Mutations
ICGC Data PortalCCDC146 
TCGA Data PortalCCDC146 
Broad Tumor PortalCCDC146
OASIS PortalCCDC146 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC146  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC146
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC146
DgiDB (Drug Gene Interaction Database)CCDC146
DoCM (Curated mutations)CCDC146 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC146 (select a term)
intoGenCCDC146
Cancer3DCCDC146(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC146
Genetic Testing Registry CCDC146
NextProtQ8IYE0 [Medical]
TSGene57639
GENETestsCCDC146
Huge Navigator CCDC146 [HugePedia]
snp3D : Map Gene to Disease57639
BioCentury BCIQCCDC146
ClinGenCCDC146
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57639
Chemical/Pharm GKB GenePA162381475
Clinical trialCCDC146
Miscellaneous
canSAR (ICR)CCDC146 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC146
EVEXCCDC146
GoPubMedCCDC146
iHOPCCDC146
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:24 CET 2017

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