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CCDC148 (coiled-coil domain containing 148)

Identity

Alias_symbol (synonym)MGC125588
Other alias-
HGNC (Hugo) CCDC148
LocusID (NCBI) 130940
Atlas_Id 61496
Location 2q24.1  [Link to chromosome band 2q24]
Location_base_pair Starts at 159027869 and ends at 159313265 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACVR1 (2q24.1) / CCDC148 (2q24.1)CCDC148 (2q24.1) / WDSUB1 (2q24.2)LY75-CD302 (2q24.2) / CCDC148 (2q24.1)
PKP4 (2q24.1) / CCDC148 (2q24.1)ACVR1 CCDC148LY75-CD302 CCDC148

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC148   25191
Cards
Entrez_Gene (NCBI)CCDC148  130940  coiled-coil domain containing 148
Aliases
GeneCards (Weizmann)CCDC148
Ensembl hg19 (Hinxton)ENSG00000153237 [Gene_View]  chr2:159027869-159313265 [Contig_View]  CCDC148 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153237 [Gene_View]  chr2:159027869-159313265 [Contig_View]  CCDC148 [Vega]
ICGC DataPortalENSG00000153237
TCGA cBioPortalCCDC148
AceView (NCBI)CCDC148
Genatlas (Paris)CCDC148
WikiGenes130940
SOURCE (Princeton)CCDC148
Genetics Home Reference (NIH)CCDC148
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC148  -     chr2:159027869-159313265 -  2q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC148  -     2q24.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC148 - 2q24.1 [CytoView hg19]  CCDC148 - 2q24.1 [CytoView hg38]
Mapping of homologs : NCBICCDC148 [Mapview hg19]  CCDC148 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF458588 AK058105 AK123220 AK308783 AK309246
RefSeq transcript (Entrez)NM_001171637 NM_001301684 NM_001301685 NM_138803
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)CCDC148
Cluster EST : UnigeneHs.668597 [ NCBI ]
CGAP (NCI)Hs.668597
Alternative Splicing GalleryENSG00000153237
Gene ExpressionCCDC148 [ NCBI-GEO ]   CCDC148 [ EBI - ARRAY_EXPRESS ]   CCDC148 [ SEEK ]   CCDC148 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC148 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130940
GTEX Portal (Tissue expression)CCDC148
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFR7
Splice isoforms : SwissVarQ8NFR7
PhosPhoSitePlusQ8NFR7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC148
DMDM Disease mutations130940
Blocks (Seattle)CCDC148
SuperfamilyQ8NFR7
Human Protein AtlasENSG00000153237
Peptide AtlasQ8NFR7
HPRD14046
IPIIPI00299702   IPI00654602   IPI00886735   IPI01019016   IPI00952958   IPI00917726   IPI00916397   IPI00916161   IPI00916553   IPI00917225   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFR7
IntAct (EBI)Q8NFR7
FunCoupENSG00000153237
BioGRIDCCDC148
STRING (EMBL)CCDC148
ZODIACCCDC148
Ontologies - Pathways
QuickGOQ8NFR7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC148
Atlas of Cancer Signalling NetworkCCDC148
Wikipedia pathwaysCCDC148
Orthology - Evolution
OrthoDB130940
GeneTree (enSembl)ENSG00000153237
Phylogenetic Trees/Animal Genes : TreeFamCCDC148
HOVERGENQ8NFR7
HOGENOMQ8NFR7
Homologs : HomoloGeneCCDC148
Homology/Alignments : Family Browser (UCSC)CCDC148
Gene fusions - Rearrangements
Fusion: TCGAACVR1 CCDC148
Fusion: TCGALY75-CD302 CCDC148
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC148 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC148
dbVarCCDC148
ClinVarCCDC148
1000_GenomesCCDC148 
Exome Variant ServerCCDC148
ExAC (Exome Aggregation Consortium)CCDC148 (select the gene name)
Genetic variants : HAPMAP130940
Genomic Variants (DGV)CCDC148 [DGVbeta]
DECIPHER (Syndromes)2:159027869-159313265  ENSG00000153237
CONAN: Copy Number AnalysisCCDC148 
Mutations
ICGC Data PortalCCDC148 
TCGA Data PortalCCDC148 
Broad Tumor PortalCCDC148
OASIS PortalCCDC148 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC148  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC148
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC148
DgiDB (Drug Gene Interaction Database)CCDC148
DoCM (Curated mutations)CCDC148 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC148 (select a term)
intoGenCCDC148
Cancer3DCCDC148(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC148
Genetic Testing Registry CCDC148
NextProtQ8NFR7 [Medical]
TSGene130940
GENETestsCCDC148
Huge Navigator CCDC148 [HugePedia]
snp3D : Map Gene to Disease130940
BioCentury BCIQCCDC148
ClinGenCCDC148
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130940
Chemical/Pharm GKB GenePA162381559
Clinical trialCCDC148
Miscellaneous
canSAR (ICR)CCDC148 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC148
EVEXCCDC148
GoPubMedCCDC148
iHOPCCDC148
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:24 CET 2017

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