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CCDC149 (coiled-coil domain containing 149)

Identity

Alias_symbol (synonym)DKFZp761B107
Other alias-
HGNC (Hugo) CCDC149
LocusID (NCBI) 91050
Atlas_Id 61498
Location 4p15.2  [Link to chromosome band 4p15]
Location_base_pair Starts at 24806117 and ends at 24912978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAPNS1 (19q13.12) / CCDC149 (4p15.2)CCDC149 (4p15.2) / GABRB1 (4p12)CCDC149 (4p15.2) / MSH2 (2p21)
CD180 (5q12.3) / CCDC149 (4p15.2)UBE2K (4p14) / CCDC149 (4p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC149   25405
Cards
Entrez_Gene (NCBI)CCDC149  91050  coiled-coil domain containing 149
Aliases
GeneCards (Weizmann)CCDC149
Ensembl hg19 (Hinxton)ENSG00000181982 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181982 [Gene_View]  chr4:24806117-24912978 [Contig_View]  CCDC149 [Vega]
ICGC DataPortalENSG00000181982
TCGA cBioPortalCCDC149
AceView (NCBI)CCDC149
Genatlas (Paris)CCDC149
WikiGenes91050
SOURCE (Princeton)CCDC149
Genetics Home Reference (NIH)CCDC149
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC149  -     chr4:24806117-24912978 -  4p15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC149  -     4p15.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC149 - 4p15.2 [CytoView hg19]  CCDC149 - 4p15.2 [CytoView hg38]
Mapping of homologs : NCBICCDC149 [Mapview hg19]  CCDC149 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086111 AK023472 AK125353 AK296454 AK302905
RefSeq transcript (Entrez)NM_001130726 NM_001330643 NM_001330644 NM_173463
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC149
Cluster EST : UnigeneHs.106432 [ NCBI ]
CGAP (NCI)Hs.106432
Alternative Splicing GalleryENSG00000181982
Gene ExpressionCCDC149 [ NCBI-GEO ]   CCDC149 [ EBI - ARRAY_EXPRESS ]   CCDC149 [ SEEK ]   CCDC149 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC149 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91050
GTEX Portal (Tissue expression)CCDC149
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZUS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZUS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZUS6
Splice isoforms : SwissVarQ6ZUS6
PhosPhoSitePlusQ6ZUS6
Domains : Interpro (EBI)Coiled-coil_dom-contain_pr_149   
Domain families : Pfam (Sanger)DUF2353 (PF09789)   
Domain families : Pfam (NCBI)pfam09789   
Conserved Domain (NCBI)CCDC149
DMDM Disease mutations91050
Blocks (Seattle)CCDC149
SuperfamilyQ6ZUS6
Human Protein AtlasENSG00000181982
Peptide AtlasQ6ZUS6
HPRD10908
IPIIPI00744210   IPI00940520   IPI00873617   IPI00939241   IPI00965995   IPI00967851   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZUS6
IntAct (EBI)Q6ZUS6
FunCoupENSG00000181982
BioGRIDCCDC149
STRING (EMBL)CCDC149
ZODIACCCDC149
Ontologies - Pathways
QuickGOQ6ZUS6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC149
Atlas of Cancer Signalling NetworkCCDC149
Wikipedia pathwaysCCDC149
Orthology - Evolution
OrthoDB91050
GeneTree (enSembl)ENSG00000181982
Phylogenetic Trees/Animal Genes : TreeFamCCDC149
HOVERGENQ6ZUS6
HOGENOMQ6ZUS6
Homologs : HomoloGeneCCDC149
Homology/Alignments : Family Browser (UCSC)CCDC149
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC149 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC149
dbVarCCDC149
ClinVarCCDC149
1000_GenomesCCDC149 
Exome Variant ServerCCDC149
ExAC (Exome Aggregation Consortium)CCDC149 (select the gene name)
Genetic variants : HAPMAP91050
Genomic Variants (DGV)CCDC149 [DGVbeta]
DECIPHERCCDC149 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC149 
Mutations
ICGC Data PortalCCDC149 
TCGA Data PortalCCDC149 
Broad Tumor PortalCCDC149
OASIS PortalCCDC149 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC149  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC149
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC149
DgiDB (Drug Gene Interaction Database)CCDC149
DoCM (Curated mutations)CCDC149 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC149 (select a term)
intoGenCCDC149
Cancer3DCCDC149(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC149
Genetic Testing Registry CCDC149
NextProtQ6ZUS6 [Medical]
TSGene91050
GENETestsCCDC149
Target ValidationCCDC149
Huge Navigator CCDC149 [HugePedia]
snp3D : Map Gene to Disease91050
BioCentury BCIQCCDC149
ClinGenCCDC149
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91050
Chemical/Pharm GKB GenePA162381560
Clinical trialCCDC149
Miscellaneous
canSAR (ICR)CCDC149 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC149
EVEXCCDC149
GoPubMedCCDC149
iHOPCCDC149
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:05 CEST 2017

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