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CCDC15 (coiled-coil domain containing 15)

Identity

Alias_symbol (synonym)FLJ13215
Other alias-
HGNC (Hugo) CCDC15
LocusID (NCBI) 80071
Atlas_Id 61499
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 124954121 and ends at 125041491 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC15 (11q24.2) / SLC37A2 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC15   25798
Cards
Entrez_Gene (NCBI)CCDC15  80071  coiled-coil domain containing 15
Aliases
GeneCards (Weizmann)CCDC15
Ensembl hg19 (Hinxton)ENSG00000149548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149548 [Gene_View]  chr11:124954121-125041491 [Contig_View]  CCDC15 [Vega]
ICGC DataPortalENSG00000149548
TCGA cBioPortalCCDC15
AceView (NCBI)CCDC15
Genatlas (Paris)CCDC15
WikiGenes80071
SOURCE (Princeton)CCDC15
Genetics Home Reference (NIH)CCDC15
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC15  -     chr11:124954121-125041491 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC15  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC15 - 11q24.2 [CytoView hg19]  CCDC15 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBICCDC15 [Mapview hg19]  CCDC15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023277 AW339835 BC018540 BU569785 DB516555
RefSeq transcript (Entrez)NM_025004
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC15
Cluster EST : UnigeneHs.287555 [ NCBI ]
CGAP (NCI)Hs.287555
Alternative Splicing GalleryENSG00000149548
Gene ExpressionCCDC15 [ NCBI-GEO ]   CCDC15 [ EBI - ARRAY_EXPRESS ]   CCDC15 [ SEEK ]   CCDC15 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80071
GTEX Portal (Tissue expression)CCDC15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P6D6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P6D6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P6D6
Splice isoforms : SwissVarQ0P6D6
PhosPhoSitePlusQ0P6D6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC15
DMDM Disease mutations80071
Blocks (Seattle)CCDC15
SuperfamilyQ0P6D6
Human Protein AtlasENSG00000149548
Peptide AtlasQ0P6D6
HPRD07820
IPIIPI00411743   IPI00975652   
Protein Interaction databases
DIP (DOE-UCLA)Q0P6D6
IntAct (EBI)Q0P6D6
FunCoupENSG00000149548
BioGRIDCCDC15
STRING (EMBL)CCDC15
ZODIACCCDC15
Ontologies - Pathways
QuickGOQ0P6D6
Ontology : AmiGOcentrosome  
Ontology : EGO-EBIcentrosome  
NDEx NetworkCCDC15
Atlas of Cancer Signalling NetworkCCDC15
Wikipedia pathwaysCCDC15
Orthology - Evolution
OrthoDB80071
GeneTree (enSembl)ENSG00000149548
Phylogenetic Trees/Animal Genes : TreeFamCCDC15
HOVERGENQ0P6D6
HOGENOMQ0P6D6
Homologs : HomoloGeneCCDC15
Homology/Alignments : Family Browser (UCSC)CCDC15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC15
dbVarCCDC15
ClinVarCCDC15
1000_GenomesCCDC15 
Exome Variant ServerCCDC15
ExAC (Exome Aggregation Consortium)CCDC15 (select the gene name)
Genetic variants : HAPMAP80071
Genomic Variants (DGV)CCDC15 [DGVbeta]
DECIPHERCCDC15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC15 
Mutations
ICGC Data PortalCCDC15 
TCGA Data PortalCCDC15 
Broad Tumor PortalCCDC15
OASIS PortalCCDC15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC15
DgiDB (Drug Gene Interaction Database)CCDC15
DoCM (Curated mutations)CCDC15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC15 (select a term)
intoGenCCDC15
Cancer3DCCDC15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC15
Genetic Testing Registry CCDC15
NextProtQ0P6D6 [Medical]
TSGene80071
GENETestsCCDC15
Target ValidationCCDC15
Huge Navigator CCDC15 [HugePedia]
snp3D : Map Gene to Disease80071
BioCentury BCIQCCDC15
ClinGenCCDC15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80071
Chemical/Pharm GKB GenePA142672175
Clinical trialCCDC15
Miscellaneous
canSAR (ICR)CCDC15 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC15
EVEXCCDC15
GoPubMedCCDC15
iHOPCCDC15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:27 CEST 2017

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