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CCDC150 (coiled-coil domain containing 150)

Identity

Alias_symbol (synonym)FLJ39660
Other alias-
HGNC (Hugo) CCDC150
LocusID (NCBI) 284992
Atlas_Id 61500
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 196639632 and ends at 196732806 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RHOA (3p21.31) / CCDC150 (2q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC150   26834
Cards
Entrez_Gene (NCBI)CCDC150  284992  coiled-coil domain containing 150
Aliases
GeneCards (Weizmann)CCDC150
Ensembl hg19 (Hinxton)ENSG00000144395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144395 [Gene_View]  chr2:196639632-196732806 [Contig_View]  CCDC150 [Vega]
ICGC DataPortalENSG00000144395
TCGA cBioPortalCCDC150
AceView (NCBI)CCDC150
Genatlas (Paris)CCDC150
WikiGenes284992
SOURCE (Princeton)CCDC150
Genetics Home Reference (NIH)CCDC150
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC150  -     chr2:196639632-196732806 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC150  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC150 - 2q33.1 [CytoView hg19]  CCDC150 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBICCDC150 [Mapview hg19]  CCDC150 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001064 AK096130 AK096979 AK125768 AK299214
RefSeq transcript (Entrez)NM_001080539 NM_173466 NM_173646
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC150
Cluster EST : UnigeneHs.132519 [ NCBI ]
CGAP (NCI)Hs.132519
Alternative Splicing GalleryENSG00000144395
Gene ExpressionCCDC150 [ NCBI-GEO ]   CCDC150 [ EBI - ARRAY_EXPRESS ]   CCDC150 [ SEEK ]   CCDC150 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC150 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284992
GTEX Portal (Tissue expression)CCDC150
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCX0
Splice isoforms : SwissVarQ8NCX0
PhosPhoSitePlusQ8NCX0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC150
DMDM Disease mutations284992
Blocks (Seattle)CCDC150
SuperfamilyQ8NCX0
Human Protein AtlasENSG00000144395
Peptide AtlasQ8NCX0
HPRD08264
IPIIPI00783185   IPI00301743   IPI00889736   IPI00889749   IPI01009201   IPI01014213   IPI00910149   IPI01009663   IPI00917884   IPI00917184   IPI01011018   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCX0
IntAct (EBI)Q8NCX0
FunCoupENSG00000144395
BioGRIDCCDC150
STRING (EMBL)CCDC150
ZODIACCCDC150
Ontologies - Pathways
QuickGOQ8NCX0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC150
Atlas of Cancer Signalling NetworkCCDC150
Wikipedia pathwaysCCDC150
Orthology - Evolution
OrthoDB284992
GeneTree (enSembl)ENSG00000144395
Phylogenetic Trees/Animal Genes : TreeFamCCDC150
HOVERGENQ8NCX0
HOGENOMQ8NCX0
Homologs : HomoloGeneCCDC150
Homology/Alignments : Family Browser (UCSC)CCDC150
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC150 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC150
dbVarCCDC150
ClinVarCCDC150
1000_GenomesCCDC150 
Exome Variant ServerCCDC150
ExAC (Exome Aggregation Consortium)CCDC150 (select the gene name)
Genetic variants : HAPMAP284992
Genomic Variants (DGV)CCDC150 [DGVbeta]
DECIPHERCCDC150 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC150 
Mutations
ICGC Data PortalCCDC150 
TCGA Data PortalCCDC150 
Broad Tumor PortalCCDC150
OASIS PortalCCDC150 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC150  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC150
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CCDC150
DgiDB (Drug Gene Interaction Database)CCDC150
DoCM (Curated mutations)CCDC150 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC150 (select a term)
intoGenCCDC150
Cancer3DCCDC150(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC150
Genetic Testing Registry CCDC150
NextProtQ8NCX0 [Medical]
TSGene284992
GENETestsCCDC150
Target ValidationCCDC150
Huge Navigator CCDC150 [HugePedia]
snp3D : Map Gene to Disease284992
BioCentury BCIQCCDC150
ClinGenCCDC150
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284992
Chemical/Pharm GKB GenePA162381583
Clinical trialCCDC150
Miscellaneous
canSAR (ICR)CCDC150 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC150
EVEXCCDC150
GoPubMedCCDC150
iHOPCCDC150
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:27 CEST 2017

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