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CCDC152 (coiled-coil domain containing 152)

Identity

Alias_symbol (synonym)LOC100129792
Other aliasCH5400
HGNC (Hugo) CCDC152
LocusID (NCBI) 100129792
Atlas_Id 61502
Location 5p12  [Link to chromosome band 5p12]
Location_base_pair Starts at 42756818 and ends at 42802437 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC152 (5p12) / CCDC152 (5p12)CCDC152 (5p12) / DGKI (7q33)CRYBA1 (17q11.2) / CCDC152 (5p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC152   34438
Cards
Entrez_Gene (NCBI)CCDC152  100129792  coiled-coil domain containing 152
AliasesCH5400
GeneCards (Weizmann)CCDC152
Ensembl hg19 (Hinxton)ENSG00000198865 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198865 [Gene_View]  chr5:42756818-42802437 [Contig_View]  CCDC152 [Vega]
ICGC DataPortalENSG00000198865
TCGA cBioPortalCCDC152
AceView (NCBI)CCDC152
Genatlas (Paris)CCDC152
WikiGenes100129792
SOURCE (Princeton)CCDC152
Genetics Home Reference (NIH)CCDC152
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC152  -     chr5:42756818-42802437 +  5p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC152  -     5p12   [Description]    (hg19-Feb_2009)
EnsemblCCDC152 - 5p12 [CytoView hg19]  CCDC152 - 5p12 [CytoView hg38]
Mapping of homologs : NCBICCDC152 [Mapview hg19]  CCDC152 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127368 AK303469 AY947526 BC015985 BC039102
RefSeq transcript (Entrez)NM_001134848
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC152
Cluster EST : UnigeneHs.745017 [ NCBI ]
CGAP (NCI)Hs.745017
Alternative Splicing GalleryENSG00000198865
Gene ExpressionCCDC152 [ NCBI-GEO ]   CCDC152 [ EBI - ARRAY_EXPRESS ]   CCDC152 [ SEEK ]   CCDC152 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC152 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100129792
GTEX Portal (Tissue expression)CCDC152
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0S7
Splice isoforms : SwissVarQ4G0S7
PhosPhoSitePlusQ4G0S7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC152
DMDM Disease mutations100129792
Blocks (Seattle)CCDC152
SuperfamilyQ4G0S7
Human Protein AtlasENSG00000198865
Peptide AtlasQ4G0S7
IPIIPI00745273   IPI00910944   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0S7
IntAct (EBI)Q4G0S7
FunCoupENSG00000198865
BioGRIDCCDC152
STRING (EMBL)CCDC152
ZODIACCCDC152
Ontologies - Pathways
QuickGOQ4G0S7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC152
Atlas of Cancer Signalling NetworkCCDC152
Wikipedia pathwaysCCDC152
Orthology - Evolution
OrthoDB100129792
GeneTree (enSembl)ENSG00000198865
Phylogenetic Trees/Animal Genes : TreeFamCCDC152
HOVERGENQ4G0S7
HOGENOMQ4G0S7
Homologs : HomoloGeneCCDC152
Homology/Alignments : Family Browser (UCSC)CCDC152
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC152 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC152
dbVarCCDC152
ClinVarCCDC152
1000_GenomesCCDC152 
Exome Variant ServerCCDC152
ExAC (Exome Aggregation Consortium)CCDC152 (select the gene name)
Genetic variants : HAPMAP100129792
Genomic Variants (DGV)CCDC152 [DGVbeta]
DECIPHERCCDC152 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC152 
Mutations
ICGC Data PortalCCDC152 
TCGA Data PortalCCDC152 
Broad Tumor PortalCCDC152
OASIS PortalCCDC152 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC152  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC152
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC152
DgiDB (Drug Gene Interaction Database)CCDC152
DoCM (Curated mutations)CCDC152 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC152 (select a term)
intoGenCCDC152
Cancer3DCCDC152(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC152
Genetic Testing Registry CCDC152
NextProtQ4G0S7 [Medical]
TSGene100129792
GENETestsCCDC152
Target ValidationCCDC152
Huge Navigator CCDC152 [HugePedia]
snp3D : Map Gene to Disease100129792
BioCentury BCIQCCDC152
ClinGenCCDC152
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129792
Chemical/Pharm GKB GenePA162381615
Clinical trialCCDC152
Miscellaneous
canSAR (ICR)CCDC152 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC152
EVEXCCDC152
GoPubMedCCDC152
iHOPCCDC152
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:05 CEST 2017

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