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CCDC153 (coiled-coil domain containing 153)

Identity

Alias_symbol (synonym)LOC283152
Other alias-
HGNC (Hugo) CCDC153
LocusID (NCBI) 283152
Atlas_Id 61503
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119190254 and ends at 119195874 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC153   27446
Cards
Entrez_Gene (NCBI)CCDC153  283152  coiled-coil domain containing 153
Aliases
GeneCards (Weizmann)CCDC153
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:119190254-119195874 [Contig_View]  CCDC153 [Vega]
TCGA cBioPortalCCDC153
AceView (NCBI)CCDC153
Genatlas (Paris)CCDC153
WikiGenes283152
SOURCE (Princeton)CCDC153
Genetics Home Reference (NIH)CCDC153
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC153  -     chr11:119190254-119195874 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC153  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC153 - 11q23.3 [CytoView hg19]  CCDC153 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBICCDC153 [Mapview hg19]  CCDC153 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA782908 AA909102 BC043548 BC101443 BC101444
RefSeq transcript (Entrez)NM_001033658 NM_001145018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC153
Cluster EST : UnigeneHs.114777 [ NCBI ]
CGAP (NCI)Hs.114777
Gene ExpressionCCDC153 [ NCBI-GEO ]   CCDC153 [ EBI - ARRAY_EXPRESS ]   CCDC153 [ SEEK ]   CCDC153 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC153 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283152
GTEX Portal (Tissue expression)CCDC153
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ494R4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ494R4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ494R4
Splice isoforms : SwissVarQ494R4
PhosPhoSitePlusQ494R4
Domains : Interpro (EBI)CCDC153   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC153
DMDM Disease mutations283152
Blocks (Seattle)CCDC153
SuperfamilyQ494R4
Peptide AtlasQ494R4
HPRD18762
IPIIPI00896521   IPI00401353   
Protein Interaction databases
DIP (DOE-UCLA)Q494R4
IntAct (EBI)Q494R4
BioGRIDCCDC153
STRING (EMBL)CCDC153
ZODIACCCDC153
Ontologies - Pathways
QuickGOQ494R4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC153
Atlas of Cancer Signalling NetworkCCDC153
Wikipedia pathwaysCCDC153
Orthology - Evolution
OrthoDB283152
Phylogenetic Trees/Animal Genes : TreeFamCCDC153
HOVERGENQ494R4
HOGENOMQ494R4
Homologs : HomoloGeneCCDC153
Homology/Alignments : Family Browser (UCSC)CCDC153
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC153
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC153 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC153
dbVarCCDC153
ClinVarCCDC153
1000_GenomesCCDC153 
Exome Variant ServerCCDC153
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP283152
Genomic Variants (DGV)CCDC153 [DGVbeta]
DECIPHERCCDC153 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC153 
Mutations
ICGC Data PortalCCDC153 
TCGA Data PortalCCDC153 
Broad Tumor PortalCCDC153
OASIS PortalCCDC153 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC153  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC153
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC153
DgiDB (Drug Gene Interaction Database)CCDC153
DoCM (Curated mutations)CCDC153 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC153 (select a term)
intoGenCCDC153
Cancer3DCCDC153(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC153
MedgenCCDC153
Genetic Testing Registry CCDC153
NextProtQ494R4 [Medical]
TSGene283152
GENETestsCCDC153
Target ValidationCCDC153
Huge Navigator CCDC153 [HugePedia]
snp3D : Map Gene to Disease283152
BioCentury BCIQCCDC153
ClinGenCCDC153
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283152
Chemical/Pharm GKB GenePA162381639
Clinical trialCCDC153
Miscellaneous
canSAR (ICR)CCDC153 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC153
EVEXCCDC153
GoPubMedCCDC153
iHOPCCDC153
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:23:11 CET 2017

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