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CCDC154 (coiled-coil domain containing 154)

Identity

Alias_namesC16orf29
chromosome 16 open reading frame 29
Alias_symbol (synonym)LOC645811
Other alias
HGNC (Hugo) CCDC154
LocusID (NCBI) 645811
Atlas_Id 53187
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1434388 and ends at 1444489 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC154   34454
Cards
Entrez_Gene (NCBI)CCDC154  645811  coiled-coil domain containing 154
AliasesC16orf29
GeneCards (Weizmann)CCDC154
Ensembl hg19 (Hinxton)ENSG00000197599 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197599 [Gene_View]  chr16:1434388-1444489 [Contig_View]  CCDC154 [Vega]
ICGC DataPortalENSG00000197599
TCGA cBioPortalCCDC154
AceView (NCBI)CCDC154
Genatlas (Paris)CCDC154
WikiGenes645811
SOURCE (Princeton)CCDC154
Genetics Home Reference (NIH)CCDC154
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC154  -     chr16:1434388-1444489 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC154  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC154 - 16p13.3 [CytoView hg19]  CCDC154 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICCDC154 [Mapview hg19]  CCDC154 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC061641 JN935901
RefSeq transcript (Entrez)NM_001143980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC154
Cluster EST : UnigeneHs.355232 [ NCBI ]
CGAP (NCI)Hs.355232
Alternative Splicing GalleryENSG00000197599
Gene ExpressionCCDC154 [ NCBI-GEO ]   CCDC154 [ EBI - ARRAY_EXPRESS ]   CCDC154 [ SEEK ]   CCDC154 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC154 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645811
GTEX Portal (Tissue expression)CCDC154
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NI56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NI56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NI56
Splice isoforms : SwissVarA6NI56
PhosPhoSitePlusA6NI56
Domains : Interpro (EBI)CCDC154   
Domain families : Pfam (Sanger)CCDC154 (PF15450)   
Domain families : Pfam (NCBI)pfam15450   
Conserved Domain (NCBI)CCDC154
DMDM Disease mutations645811
Blocks (Seattle)CCDC154
SuperfamilyA6NI56
Human Protein AtlasENSG00000197599
Peptide AtlasA6NI56
IPIIPI00477128   
Protein Interaction databases
DIP (DOE-UCLA)A6NI56
IntAct (EBI)A6NI56
FunCoupENSG00000197599
BioGRIDCCDC154
STRING (EMBL)CCDC154
ZODIACCCDC154
Ontologies - Pathways
QuickGOA6NI56
Ontology : AmiGOearly endosome  
Ontology : EGO-EBIearly endosome  
NDEx NetworkCCDC154
Atlas of Cancer Signalling NetworkCCDC154
Wikipedia pathwaysCCDC154
Orthology - Evolution
OrthoDB645811
GeneTree (enSembl)ENSG00000197599
Phylogenetic Trees/Animal Genes : TreeFamCCDC154
HOVERGENA6NI56
HOGENOMA6NI56
Homologs : HomoloGeneCCDC154
Homology/Alignments : Family Browser (UCSC)CCDC154
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC154 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC154
dbVarCCDC154
ClinVarCCDC154
1000_GenomesCCDC154 
Exome Variant ServerCCDC154
ExAC (Exome Aggregation Consortium)CCDC154 (select the gene name)
Genetic variants : HAPMAP645811
Genomic Variants (DGV)CCDC154 [DGVbeta]
DECIPHERCCDC154 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC154 
Mutations
ICGC Data PortalCCDC154 
TCGA Data PortalCCDC154 
Broad Tumor PortalCCDC154
OASIS PortalCCDC154 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC154  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC154
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC154
DgiDB (Drug Gene Interaction Database)CCDC154
DoCM (Curated mutations)CCDC154 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC154 (select a term)
intoGenCCDC154
Cancer3DCCDC154(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC154
Genetic Testing Registry CCDC154
NextProtA6NI56 [Medical]
TSGene645811
GENETestsCCDC154
Target ValidationCCDC154
Huge Navigator CCDC154 [HugePedia]
snp3D : Map Gene to Disease645811
BioCentury BCIQCCDC154
ClinGenCCDC154
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645811
Chemical/Pharm GKB GenePA162381640
Clinical trialCCDC154
Miscellaneous
canSAR (ICR)CCDC154 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC154
EVEXCCDC154
GoPubMedCCDC154
iHOPCCDC154
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:56:57 CEST 2017

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