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CCDC155 (coiled-coil domain containing 155)

Identity

Alias_symbol (synonym)FLJ32658
KASH5
Other alias
HGNC (Hugo) CCDC155
LocusID (NCBI) 147872
Atlas_Id 54973
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49891475 and ends at 49921256 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGAP5 (10q22.2) / CCDC155 (19q13.33)NLGN1 (3q26.31) / CCDC155 (19q13.33)PRRG2 (19q13.33) / CCDC155 (19q13.33)
RPL13A (19q13.33) / CCDC155 (19q13.33)PRRG2 19q13.33 / CCDC155 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC155   26520
Cards
Entrez_Gene (NCBI)CCDC155  147872  coiled-coil domain containing 155
AliasesKASH5
GeneCards (Weizmann)CCDC155
Ensembl hg19 (Hinxton)ENSG00000161609 [Gene_View]  chr19:49891475-49921256 [Contig_View]  CCDC155 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161609 [Gene_View]  chr19:49891475-49921256 [Contig_View]  CCDC155 [Vega]
ICGC DataPortalENSG00000161609
TCGA cBioPortalCCDC155
AceView (NCBI)CCDC155
Genatlas (Paris)CCDC155
WikiGenes147872
SOURCE (Princeton)CCDC155
Genetics Home Reference (NIH)CCDC155
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC155  -     chr19:49891475-49921256 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC155  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblCCDC155 - 19q13.33 [CytoView hg19]  CCDC155 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICCDC155 [Mapview hg19]  CCDC155 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057220 AK093322 AK097696 BC029811 DB024870
RefSeq transcript (Entrez)NM_144688
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CCDC155
Cluster EST : UnigeneHs.743867 [ NCBI ]
CGAP (NCI)Hs.743867
Alternative Splicing GalleryENSG00000161609
Gene ExpressionCCDC155 [ NCBI-GEO ]   CCDC155 [ EBI - ARRAY_EXPRESS ]   CCDC155 [ SEEK ]   CCDC155 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC155 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147872
GTEX Portal (Tissue expression)CCDC155
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6L0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6L0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6L0
Splice isoforms : SwissVarQ8N6L0
PhosPhoSitePlusQ8N6L0
Domains : Interpro (EBI)DUSP    EF-hand-dom_pair    KASH5    KASH5_coiled-coil   
Domain families : Pfam (Sanger)KASH_CCD (PF14662)   
Domain families : Pfam (NCBI)pfam14662   
Conserved Domain (NCBI)CCDC155
DMDM Disease mutations147872
Blocks (Seattle)CCDC155
SuperfamilyQ8N6L0
Human Protein AtlasENSG00000161609
Peptide AtlasQ8N6L0
HPRD08134
IPIIPI00646826   IPI00807332   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6L0
IntAct (EBI)Q8N6L0
FunCoupENSG00000161609
BioGRIDCCDC155
STRING (EMBL)CCDC155
ZODIACCCDC155
Ontologies - Pathways
QuickGOQ8N6L0
Ontology : AmiGOdouble-strand break repair via homologous recombination  chromosome, telomeric region  lateral element  protein binding  nuclear outer membrane  synapsis  spermatogenesis  integral component of membrane  identical protein binding  oogenesis  dynein complex binding  chromosome localization to nuclear envelope involved in homologous chromosome segregation  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  chromosome, telomeric region  lateral element  protein binding  nuclear outer membrane  synapsis  spermatogenesis  integral component of membrane  identical protein binding  oogenesis  dynein complex binding  chromosome localization to nuclear envelope involved in homologous chromosome segregation  
NDEx NetworkCCDC155
Atlas of Cancer Signalling NetworkCCDC155
Wikipedia pathwaysCCDC155
Orthology - Evolution
OrthoDB147872
GeneTree (enSembl)ENSG00000161609
Phylogenetic Trees/Animal Genes : TreeFamCCDC155
HOVERGENQ8N6L0
HOGENOMQ8N6L0
Homologs : HomoloGeneCCDC155
Homology/Alignments : Family Browser (UCSC)CCDC155
Gene fusions - Rearrangements
Fusion : MitelmanNLGN1/CCDC155 [3q26.31/19q13.33]  [t(3;19)(q26;q13)]  
Fusion : MitelmanPRRG2/CCDC155 [19q13.33/19q13.33]  [t(19;19)(q13;q13)]  
Fusion: TCGAPRRG2 19q13.33 CCDC155 19q13.33 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC155 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC155
dbVarCCDC155
ClinVarCCDC155
1000_GenomesCCDC155 
Exome Variant ServerCCDC155
ExAC (Exome Aggregation Consortium)CCDC155 (select the gene name)
Genetic variants : HAPMAP147872
Genomic Variants (DGV)CCDC155 [DGVbeta]
DECIPHER (Syndromes)19:49891475-49921256  ENSG00000161609
CONAN: Copy Number AnalysisCCDC155 
Mutations
ICGC Data PortalCCDC155 
TCGA Data PortalCCDC155 
Broad Tumor PortalCCDC155
OASIS PortalCCDC155 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC155  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC155
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC155
DgiDB (Drug Gene Interaction Database)CCDC155
DoCM (Curated mutations)CCDC155 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC155 (select a term)
intoGenCCDC155
Cancer3DCCDC155(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC155
Genetic Testing Registry CCDC155
NextProtQ8N6L0 [Medical]
TSGene147872
GENETestsCCDC155
Huge Navigator CCDC155 [HugePedia]
snp3D : Map Gene to Disease147872
BioCentury BCIQCCDC155
ClinGenCCDC155
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147872
Chemical/Pharm GKB GenePA162381684
Clinical trialCCDC155
Miscellaneous
canSAR (ICR)CCDC155 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC155
EVEXCCDC155
GoPubMedCCDC155
iHOPCCDC155
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:14 CEST 2017

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