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CCDC157 (coiled-coil domain containing 157)

Identity

Other alias-
HGNC (Hugo) CCDC157
LocusID (NCBI) 550631
Atlas_Id 61505
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30356635 and ends at 30378655 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC157   33854
Cards
Entrez_Gene (NCBI)CCDC157  550631  coiled-coil domain containing 157
Aliases
GeneCards (Weizmann)CCDC157
Ensembl hg19 (Hinxton)ENSG00000187860 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187860 [Gene_View]  chr22:30356635-30378655 [Contig_View]  CCDC157 [Vega]
ICGC DataPortalENSG00000187860
TCGA cBioPortalCCDC157
AceView (NCBI)CCDC157
Genatlas (Paris)CCDC157
WikiGenes550631
SOURCE (Princeton)CCDC157
Genetics Home Reference (NIH)CCDC157
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC157  -     chr22:30356635-30378655 +  22q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC157  -     22q12.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC157 - 22q12.2 [CytoView hg19]  CCDC157 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBICCDC157 [Mapview hg19]  CCDC157 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC018040 BC092419 BC119799 BC127255 CR936833
RefSeq transcript (Entrez)NM_001017437 NM_001318334 NM_001318335
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC157
Cluster EST : UnigeneHs.505597 [ NCBI ]
CGAP (NCI)Hs.505597
Alternative Splicing GalleryENSG00000187860
Gene ExpressionCCDC157 [ NCBI-GEO ]   CCDC157 [ EBI - ARRAY_EXPRESS ]   CCDC157 [ SEEK ]   CCDC157 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC157 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)550631
GTEX Portal (Tissue expression)CCDC157
Human Protein AtlasENSG00000187860-CCDC157 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ569K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ569K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ569K6
Splice isoforms : SwissVarQ569K6
PhosPhoSitePlusQ569K6
Domains : Interpro (EBI)CCDC157   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC157
DMDM Disease mutations550631
Blocks (Seattle)CCDC157
SuperfamilyQ569K6
Human Protein Atlas [tissue]ENSG00000187860-CCDC157 [tissue]
Peptide AtlasQ569K6
HPRD18686
IPIIPI00879392   IPI00879538   IPI00879730   IPI00879878   
Protein Interaction databases
DIP (DOE-UCLA)Q569K6
IntAct (EBI)Q569K6
FunCoupENSG00000187860
BioGRIDCCDC157
STRING (EMBL)CCDC157
ZODIACCCDC157
Ontologies - Pathways
QuickGOQ569K6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC157
Atlas of Cancer Signalling NetworkCCDC157
Wikipedia pathwaysCCDC157
Orthology - Evolution
OrthoDB550631
GeneTree (enSembl)ENSG00000187860
Phylogenetic Trees/Animal Genes : TreeFamCCDC157
HOVERGENQ569K6
HOGENOMQ569K6
Homologs : HomoloGeneCCDC157
Homology/Alignments : Family Browser (UCSC)CCDC157
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC157
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC157 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC157
dbVarCCDC157
ClinVarCCDC157
1000_GenomesCCDC157 
Exome Variant ServerCCDC157
ExAC (Exome Aggregation Consortium)ENSG00000187860
GNOMAD BrowserENSG00000187860
Genetic variants : HAPMAP550631
Genomic Variants (DGV)CCDC157 [DGVbeta]
DECIPHERCCDC157 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC157 
Mutations
ICGC Data PortalCCDC157 
TCGA Data PortalCCDC157 
Broad Tumor PortalCCDC157
OASIS PortalCCDC157 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC157  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC157
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC157
DgiDB (Drug Gene Interaction Database)CCDC157
DoCM (Curated mutations)CCDC157 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC157 (select a term)
intoGenCCDC157
Cancer3DCCDC157(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC157
MedgenCCDC157
Genetic Testing Registry CCDC157
NextProtQ569K6 [Medical]
TSGene550631
GENETestsCCDC157
Target ValidationCCDC157
Huge Navigator CCDC157 [HugePedia]
snp3D : Map Gene to Disease550631
BioCentury BCIQCCDC157
ClinGenCCDC157
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD550631
Chemical/Pharm GKB GenePA164717678
Clinical trialCCDC157
Miscellaneous
canSAR (ICR)CCDC157 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC157
EVEXCCDC157
GoPubMedCCDC157
iHOPCCDC157
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:43:30 CET 2017

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