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CCDC158 (coiled-coil domain containing 158)

Identity

Alias_symbol (synonym)FLJ25770
Other alias-
HGNC (Hugo) CCDC158
LocusID (NCBI) 339965
Atlas_Id 61506
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 76313039 and ends at 76407305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SCARB2 (4q21.1) / CCDC158 (4q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC158   26374
Cards
Entrez_Gene (NCBI)CCDC158  339965  coiled-coil domain containing 158
Aliases
GeneCards (Weizmann)CCDC158
Ensembl hg19 (Hinxton)ENSG00000163749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163749 [Gene_View]  chr4:76313039-76407305 [Contig_View]  CCDC158 [Vega]
ICGC DataPortalENSG00000163749
TCGA cBioPortalCCDC158
AceView (NCBI)CCDC158
Genatlas (Paris)CCDC158
WikiGenes339965
SOURCE (Princeton)CCDC158
Genetics Home Reference (NIH)CCDC158
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC158  -     chr4:76313039-76407305 -  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC158  -     4q21.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC158 - 4q21.1 [CytoView hg19]  CCDC158 - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBICCDC158 [Mapview hg19]  CCDC158 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098600 AK098636 AL832445 AV658624 BC035224
RefSeq transcript (Entrez)NM_001042784 NM_178555
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC158
Cluster EST : UnigeneHs.529680 [ NCBI ]
CGAP (NCI)Hs.529680
Alternative Splicing GalleryENSG00000163749
Gene ExpressionCCDC158 [ NCBI-GEO ]   CCDC158 [ EBI - ARRAY_EXPRESS ]   CCDC158 [ SEEK ]   CCDC158 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC158 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339965
GTEX Portal (Tissue expression)CCDC158
Human Protein AtlasENSG00000163749-CCDC158 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5M9N0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5M9N0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5M9N0
Splice isoforms : SwissVarQ5M9N0
PhosPhoSitePlusQ5M9N0
Domains : Interpro (EBI)CCDC158   
Domain families : Pfam (Sanger)CCDC158 (PF15921)   
Domain families : Pfam (NCBI)pfam15921   
Conserved Domain (NCBI)CCDC158
DMDM Disease mutations339965
Blocks (Seattle)CCDC158
SuperfamilyQ5M9N0
Human Protein Atlas [tissue]ENSG00000163749-CCDC158 [tissue]
Peptide AtlasQ5M9N0
HPRD13395
IPIIPI00784980   IPI00337403   IPI00887210   
Protein Interaction databases
DIP (DOE-UCLA)Q5M9N0
IntAct (EBI)Q5M9N0
FunCoupENSG00000163749
BioGRIDCCDC158
STRING (EMBL)CCDC158
ZODIACCCDC158
Ontologies - Pathways
QuickGOQ5M9N0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC158
Atlas of Cancer Signalling NetworkCCDC158
Wikipedia pathwaysCCDC158
Orthology - Evolution
OrthoDB339965
GeneTree (enSembl)ENSG00000163749
Phylogenetic Trees/Animal Genes : TreeFamCCDC158
HOVERGENQ5M9N0
HOGENOMQ5M9N0
Homologs : HomoloGeneCCDC158
Homology/Alignments : Family Browser (UCSC)CCDC158
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC158
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC158 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC158
dbVarCCDC158
ClinVarCCDC158
1000_GenomesCCDC158 
Exome Variant ServerCCDC158
ExAC (Exome Aggregation Consortium)ENSG00000163749
GNOMAD BrowserENSG00000163749
Genetic variants : HAPMAP339965
Genomic Variants (DGV)CCDC158 [DGVbeta]
DECIPHERCCDC158 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC158 
Mutations
ICGC Data PortalCCDC158 
TCGA Data PortalCCDC158 
Broad Tumor PortalCCDC158
OASIS PortalCCDC158 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC158  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC158
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC158
DgiDB (Drug Gene Interaction Database)CCDC158
DoCM (Curated mutations)CCDC158 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC158 (select a term)
intoGenCCDC158
Cancer3DCCDC158(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC158
MedgenCCDC158
Genetic Testing Registry CCDC158
NextProtQ5M9N0 [Medical]
TSGene339965
GENETestsCCDC158
Target ValidationCCDC158
Huge Navigator CCDC158 [HugePedia]
snp3D : Map Gene to Disease339965
BioCentury BCIQCCDC158
ClinGenCCDC158
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339965
Chemical/Pharm GKB GenePA164717707
Clinical trialCCDC158
Miscellaneous
canSAR (ICR)CCDC158 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC158
EVEXCCDC158
GoPubMedCCDC158
iHOPCCDC158
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:41 CET 2017

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