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CCDC159 (coiled-coil domain containing 159)

Identity

Other alias-
HGNC (Hugo) CCDC159
LocusID (NCBI) 126075
Atlas_Id 61507
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11346505 and ends at 11354944 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC159 (19p13.2) / PLPPR2 (19p13.2)CCDC159 (19p13.2) / RAB27A (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC159   26996
Cards
Entrez_Gene (NCBI)CCDC159  126075  coiled-coil domain containing 159
Aliases
GeneCards (Weizmann)CCDC159
Ensembl hg19 (Hinxton)ENSG00000183401 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183401 [Gene_View]  chr19:11346505-11354944 [Contig_View]  CCDC159 [Vega]
ICGC DataPortalENSG00000183401
TCGA cBioPortalCCDC159
AceView (NCBI)CCDC159
Genatlas (Paris)CCDC159
WikiGenes126075
SOURCE (Princeton)CCDC159
Genetics Home Reference (NIH)CCDC159
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC159  -     chr19:11346505-11354944 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC159  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC159 - 19p13.2 [CytoView hg19]  CCDC159 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBICCDC159 [Mapview hg19]  CCDC159 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127284 AK293611 AK301653 AK303641 AK316339
RefSeq transcript (Entrez)NM_001080503
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC159
Cluster EST : UnigeneHs.631636 [ NCBI ]
CGAP (NCI)Hs.631636
Alternative Splicing GalleryENSG00000183401
Gene ExpressionCCDC159 [ NCBI-GEO ]   CCDC159 [ EBI - ARRAY_EXPRESS ]   CCDC159 [ SEEK ]   CCDC159 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC159 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126075
GTEX Portal (Tissue expression)CCDC159
Human Protein AtlasENSG00000183401-CCDC159 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7I6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7I6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7I6
Splice isoforms : SwissVarP0C7I6
PhosPhoSitePlusP0C7I6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC159
DMDM Disease mutations126075
Blocks (Seattle)CCDC159
SuperfamilyP0C7I6
Human Protein Atlas [tissue]ENSG00000183401-CCDC159 [tissue]
Peptide AtlasP0C7I6
IPIIPI00796915   IPI00941352   IPI00974356   IPI00974174   IPI00909284   
Protein Interaction databases
DIP (DOE-UCLA)P0C7I6
IntAct (EBI)P0C7I6
FunCoupENSG00000183401
BioGRIDCCDC159
STRING (EMBL)CCDC159
ZODIACCCDC159
Ontologies - Pathways
QuickGOP0C7I6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC159
Atlas of Cancer Signalling NetworkCCDC159
Wikipedia pathwaysCCDC159
Orthology - Evolution
OrthoDB126075
GeneTree (enSembl)ENSG00000183401
Phylogenetic Trees/Animal Genes : TreeFamCCDC159
HOVERGENP0C7I6
HOGENOMP0C7I6
Homologs : HomoloGeneCCDC159
Homology/Alignments : Family Browser (UCSC)CCDC159
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC159
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC159 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC159
dbVarCCDC159
ClinVarCCDC159
1000_GenomesCCDC159 
Exome Variant ServerCCDC159
ExAC (Exome Aggregation Consortium)ENSG00000183401
GNOMAD BrowserENSG00000183401
Genetic variants : HAPMAP126075
Genomic Variants (DGV)CCDC159 [DGVbeta]
DECIPHERCCDC159 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC159 
Mutations
ICGC Data PortalCCDC159 
TCGA Data PortalCCDC159 
Broad Tumor PortalCCDC159
OASIS PortalCCDC159 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC159  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC159
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC159
DgiDB (Drug Gene Interaction Database)CCDC159
DoCM (Curated mutations)CCDC159 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC159 (select a term)
intoGenCCDC159
Cancer3DCCDC159(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC159
MedgenCCDC159
Genetic Testing Registry CCDC159
NextProtP0C7I6 [Medical]
TSGene126075
GENETestsCCDC159
Target ValidationCCDC159
Huge Navigator CCDC159 [HugePedia]
snp3D : Map Gene to Disease126075
BioCentury BCIQCCDC159
ClinGenCCDC159
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126075
Chemical/Pharm GKB GenePA165393298
Clinical trialCCDC159
Miscellaneous
canSAR (ICR)CCDC159 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC159
EVEXCCDC159
GoPubMedCCDC159
iHOPCCDC159
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:18 CET 2017

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