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CCDC160 (coiled-coil domain containing 160)

Identity

Other alias-
HGNC (Hugo) CCDC160
LocusID (NCBI) 347475
Atlas_Id 61508
Location Xq26.2  [Link to chromosome band Xq26]
Location_base_pair Starts at 134237047 and ends at 134245778 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC160   37286
Cards
Entrez_Gene (NCBI)CCDC160  347475  coiled-coil domain containing 160
Aliases
GeneCards (Weizmann)CCDC160
Ensembl hg19 (Hinxton)ENSG00000203952 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203952 [Gene_View]  chrX:134237047-134245778 [Contig_View]  CCDC160 [Vega]
ICGC DataPortalENSG00000203952
TCGA cBioPortalCCDC160
AceView (NCBI)CCDC160
Genatlas (Paris)CCDC160
WikiGenes347475
SOURCE (Princeton)CCDC160
Genetics Home Reference (NIH)CCDC160
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC160  -     chrX:134237047-134245778 +  Xq26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC160  -     Xq26.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC160 - Xq26.2 [CytoView hg19]  CCDC160 - Xq26.2 [CytoView hg38]
Mapping of homologs : NCBICCDC160 [Mapview hg19]  CCDC160 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC017958
RefSeq transcript (Entrez)NM_001101357
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC160
Cluster EST : UnigeneHs.679431 [ NCBI ]
CGAP (NCI)Hs.679431
Alternative Splicing GalleryENSG00000203952
Gene ExpressionCCDC160 [ NCBI-GEO ]   CCDC160 [ EBI - ARRAY_EXPRESS ]   CCDC160 [ SEEK ]   CCDC160 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC160 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347475
GTEX Portal (Tissue expression)CCDC160
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGH7
Splice isoforms : SwissVarA6NGH7
PhosPhoSitePlusA6NGH7
Domains : Interpro (EBI)Ccdc160   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC160
DMDM Disease mutations347475
Blocks (Seattle)CCDC160
SuperfamilyA6NGH7
Human Protein AtlasENSG00000203952
Peptide AtlasA6NGH7
IPIIPI00745628   
Protein Interaction databases
DIP (DOE-UCLA)A6NGH7
IntAct (EBI)A6NGH7
FunCoupENSG00000203952
BioGRIDCCDC160
STRING (EMBL)CCDC160
ZODIACCCDC160
Ontologies - Pathways
QuickGOA6NGH7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC160
Atlas of Cancer Signalling NetworkCCDC160
Wikipedia pathwaysCCDC160
Orthology - Evolution
OrthoDB347475
GeneTree (enSembl)ENSG00000203952
Phylogenetic Trees/Animal Genes : TreeFamCCDC160
HOVERGENA6NGH7
HOGENOMA6NGH7
Homologs : HomoloGeneCCDC160
Homology/Alignments : Family Browser (UCSC)CCDC160
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC160 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC160
dbVarCCDC160
ClinVarCCDC160
1000_GenomesCCDC160 
Exome Variant ServerCCDC160
ExAC (Exome Aggregation Consortium)CCDC160 (select the gene name)
Genetic variants : HAPMAP347475
Genomic Variants (DGV)CCDC160 [DGVbeta]
DECIPHERCCDC160 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC160 
Mutations
ICGC Data PortalCCDC160 
TCGA Data PortalCCDC160 
Broad Tumor PortalCCDC160
OASIS PortalCCDC160 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC160  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC160
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC160
DgiDB (Drug Gene Interaction Database)CCDC160
DoCM (Curated mutations)CCDC160 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC160 (select a term)
intoGenCCDC160
Cancer3DCCDC160(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC160
Genetic Testing Registry CCDC160
NextProtA6NGH7 [Medical]
TSGene347475
GENETestsCCDC160
Target ValidationCCDC160
Huge Navigator CCDC160 [HugePedia]
snp3D : Map Gene to Disease347475
BioCentury BCIQCCDC160
ClinGenCCDC160
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347475
Chemical/Pharm GKB GenePA165756450
Clinical trialCCDC160
Miscellaneous
canSAR (ICR)CCDC160 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC160
EVEXCCDC160
GoPubMedCCDC160
iHOPCCDC160
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:28 CEST 2017

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