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CCDC162P (coiled-coil domain containing 162, pseudogene)

Identity

Alias_namesC6orf184
C6orf185
CCDC162
chromosome 6 open reading frame 184
chromosome 6 open reading frame 185
Alias_symbol (synonym)bA425D10.7
bA425D10.3
Other alias
HGNC (Hugo) CCDC162P
LocusID (NCBI) 221262
Atlas_Id 61509
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 109294303 and ends at 109308220 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC162P (6q21) / CCDC162P (6q21)PNPLA2 (11p15.5) / CCDC162P (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC162P   21565
Cards
Entrez_Gene (NCBI)CCDC162P  221262  coiled-coil domain containing 162, pseudogene
AliasesC6orf184; C6orf185; CCDC162; bA425D10.3; 
bA425D10.7
GeneCards (Weizmann)CCDC162P
Ensembl hg19 (Hinxton)ENSG00000203799 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203799 [Gene_View]  ENSG00000203799 [Sequence]  chr6:109294303-109308220 [Contig_View]  CCDC162P [Vega]
ICGC DataPortalENSG00000203799
TCGA cBioPortalCCDC162P
AceView (NCBI)CCDC162P
Genatlas (Paris)CCDC162P
WikiGenes221262
SOURCE (Princeton)CCDC162P
Genetics Home Reference (NIH)CCDC162P
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC162P  -     chr6:109294303-109308220 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC162P  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblCCDC162P - 6q21 [CytoView hg19]  CCDC162P - 6q21 [CytoView hg38]
Mapping of homologs : NCBICCDC162P [Mapview hg19]  CCDC162P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC107113 BC107114 BC128118 BC128119
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC162P
Cluster EST : UnigeneHs.723571 [ NCBI ]
CGAP (NCI)Hs.723571
Alternative Splicing GalleryENSG00000203799
Gene ExpressionCCDC162P [ NCBI-GEO ]   CCDC162P [ EBI - ARRAY_EXPRESS ]   CCDC162P [ SEEK ]   CCDC162P [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC162P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221262
GTEX Portal (Tissue expression)CCDC162P
Human Protein AtlasENSG00000203799-CCDC162P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2VCL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2VCL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2VCL2
Splice isoforms : SwissVarA2VCL2
PhosPhoSitePlusA2VCL2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC162P
DMDM Disease mutations221262
Blocks (Seattle)CCDC162P
SuperfamilyA2VCL2
Human Protein Atlas [tissue]ENSG00000203799-CCDC162P [tissue]
Peptide AtlasA2VCL2
IPIIPI00151980   IPI00868927   IPI00982812   
Protein Interaction databases
DIP (DOE-UCLA)A2VCL2
IntAct (EBI)A2VCL2
FunCoupENSG00000203799
BioGRIDCCDC162P
STRING (EMBL)CCDC162P
ZODIACCCDC162P
Ontologies - Pathways
QuickGOA2VCL2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC162P
Atlas of Cancer Signalling NetworkCCDC162P
Wikipedia pathwaysCCDC162P
Orthology - Evolution
OrthoDB221262
GeneTree (enSembl)ENSG00000203799
Phylogenetic Trees/Animal Genes : TreeFamCCDC162P
HOVERGENA2VCL2
HOGENOMA2VCL2
Homologs : HomoloGeneCCDC162P
Homology/Alignments : Family Browser (UCSC)CCDC162P
Gene fusions - Rearrangements
Fusion : QuiverCCDC162P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC162P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC162P
dbVarCCDC162P
ClinVarCCDC162P
1000_GenomesCCDC162P 
Exome Variant ServerCCDC162P
ExAC (Exome Aggregation Consortium)ENSG00000203799
GNOMAD BrowserENSG00000203799
Varsome BrowserCCDC162P
Genetic variants : HAPMAP221262
Genomic Variants (DGV)CCDC162P [DGVbeta]
DECIPHERCCDC162P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC162P 
Mutations
ICGC Data PortalCCDC162P 
TCGA Data PortalCCDC162P 
Broad Tumor PortalCCDC162P
OASIS PortalCCDC162P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC162P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC162P
DgiDB (Drug Gene Interaction Database)CCDC162P
DoCM (Curated mutations)CCDC162P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC162P (select a term)
intoGenCCDC162P
Cancer3DCCDC162P(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC162P
MedgenCCDC162P
Genetic Testing Registry CCDC162P
NextProtA2VCL2 [Medical]
TSGene221262
GENETestsCCDC162P
Target ValidationCCDC162P
Huge Navigator CCDC162P [HugePedia]
snp3D : Map Gene to Disease221262
BioCentury BCIQCCDC162P
ClinGenCCDC162P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221262
Chemical/Pharm GKB GenePA134874211
Clinical trialCCDC162P
Miscellaneous
canSAR (ICR)CCDC162P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC162P
EVEXCCDC162P
GoPubMedCCDC162P
iHOPCCDC162P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:39:35 CEST 2018

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