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CCDC166 (coiled-coil domain containing 166)

Identity

Other alias-
HGNC (Hugo) CCDC166
LocusID (NCBI) 100130274
Atlas_Id 61511
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143706694 and ends at 143708109 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC166   41910
Cards
Entrez_Gene (NCBI)CCDC166  100130274  coiled-coil domain containing 166
Aliases
GeneCards (Weizmann)CCDC166
Ensembl hg19 (Hinxton)ENSG00000255181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255181 [Gene_View]  chr8:143706694-143708109 [Contig_View]  CCDC166 [Vega]
ICGC DataPortalENSG00000255181
TCGA cBioPortalCCDC166
AceView (NCBI)CCDC166
Genatlas (Paris)CCDC166
WikiGenes100130274
SOURCE (Princeton)CCDC166
Genetics Home Reference (NIH)CCDC166
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC166  -     chr8:143706694-143708109 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC166  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC166 - 8q24.3 [CytoView hg19]  CCDC166 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBICCDC166 [Mapview hg19]  CCDC166 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001162914
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187571
Consensus coding sequences : CCDS (NCBI)CCDC166
Cluster EST : UnigeneHs.730002 [ NCBI ]
CGAP (NCI)Hs.730002
Alternative Splicing GalleryENSG00000255181
Gene ExpressionCCDC166 [ NCBI-GEO ]   CCDC166 [ EBI - ARRAY_EXPRESS ]   CCDC166 [ SEEK ]   CCDC166 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC166 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130274
GTEX Portal (Tissue expression)CCDC166
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW27
Splice isoforms : SwissVarP0CW27
PhosPhoSitePlusP0CW27
Domains : Interpro (EBI)CCDC166    DUF4515   
Domain families : Pfam (Sanger)DUF4515 (PF14988)   
Domain families : Pfam (NCBI)pfam14988   
Conserved Domain (NCBI)CCDC166
DMDM Disease mutations100130274
Blocks (Seattle)CCDC166
SuperfamilyP0CW27
Human Protein AtlasENSG00000255181
Peptide AtlasP0CW27
IPIIPI00930560   
Protein Interaction databases
DIP (DOE-UCLA)P0CW27
IntAct (EBI)P0CW27
FunCoupENSG00000255181
BioGRIDCCDC166
STRING (EMBL)CCDC166
ZODIACCCDC166
Ontologies - Pathways
QuickGOP0CW27
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC166
Atlas of Cancer Signalling NetworkCCDC166
Wikipedia pathwaysCCDC166
Orthology - Evolution
OrthoDB100130274
GeneTree (enSembl)ENSG00000255181
Phylogenetic Trees/Animal Genes : TreeFamCCDC166
HOVERGENP0CW27
HOGENOMP0CW27
Homologs : HomoloGeneCCDC166
Homology/Alignments : Family Browser (UCSC)CCDC166
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC166 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC166
dbVarCCDC166
ClinVarCCDC166
1000_GenomesCCDC166 
Exome Variant ServerCCDC166
ExAC (Exome Aggregation Consortium)CCDC166 (select the gene name)
Genetic variants : HAPMAP100130274
Genomic Variants (DGV)CCDC166 [DGVbeta]
DECIPHERCCDC166 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC166 
Mutations
ICGC Data PortalCCDC166 
TCGA Data PortalCCDC166 
Broad Tumor PortalCCDC166
OASIS PortalCCDC166 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC166  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC166
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC166
DgiDB (Drug Gene Interaction Database)CCDC166
DoCM (Curated mutations)CCDC166 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC166 (select a term)
intoGenCCDC166
Cancer3DCCDC166(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC166
Genetic Testing Registry CCDC166
NextProtP0CW27 [Medical]
TSGene100130274
GENETestsCCDC166
Target ValidationCCDC166
Huge Navigator CCDC166 [HugePedia]
snp3D : Map Gene to Disease100130274
BioCentury BCIQCCDC166
ClinGenCCDC166
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130274
Chemical/Pharm GKB GenePA166049076
Clinical trialCCDC166
Miscellaneous
canSAR (ICR)CCDC166 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC166
EVEXCCDC166
GoPubMedCCDC166
iHOPCCDC166
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:06 CEST 2017

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