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CCDC167 (coiled-coil domain containing 167)

Identity

Alias_namesC6orf129
chromosome 6 open reading frame 129
Alias_symbol (synonym)dJ153P14.2
Other aliasHSPC265
HGNC (Hugo) CCDC167
LocusID (NCBI) 154467
Atlas_Id 61512
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 37482921 and ends at 37499924 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC167 (6p21.2) / RRP7A (22q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;22)(p21;q13) CCDC167/RRP7A


External links

Nomenclature
HGNC (Hugo)CCDC167   21239
Cards
Entrez_Gene (NCBI)CCDC167  154467  coiled-coil domain containing 167
AliasesC6orf129; HSPC265
GeneCards (Weizmann)CCDC167
Ensembl hg19 (Hinxton)ENSG00000198937 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198937 [Gene_View]  ENSG00000198937 [Sequence]  chr6:37482921-37499924 [Contig_View]  CCDC167 [Vega]
ICGC DataPortalENSG00000198937
TCGA cBioPortalCCDC167
AceView (NCBI)CCDC167
Genatlas (Paris)CCDC167
WikiGenes154467
SOURCE (Princeton)CCDC167
Genetics Home Reference (NIH)CCDC167
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC167  -     chr6:37482921-37499924 -  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC167  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblCCDC167 - 6p21.2 [CytoView hg19]  CCDC167 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBICCDC167 [Mapview hg19]  CCDC167 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161383 BC003515 BC104835 BC108655 BE907609
RefSeq transcript (Entrez)NM_138493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC167
Cluster EST : UnigeneHs.284207 [ NCBI ]
CGAP (NCI)Hs.284207
Alternative Splicing GalleryENSG00000198937
Gene ExpressionCCDC167 [ NCBI-GEO ]   CCDC167 [ EBI - ARRAY_EXPRESS ]   CCDC167 [ SEEK ]   CCDC167 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC167 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154467
GTEX Portal (Tissue expression)CCDC167
Human Protein AtlasENSG00000198937-CCDC167 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0B6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0B6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0B6
Splice isoforms : SwissVarQ9P0B6
PhosPhoSitePlusQ9P0B6
Domains : Interpro (EBI)CCDC-167   
Domain families : Pfam (Sanger)CCDC-167 (PF15188)   
Domain families : Pfam (NCBI)pfam15188   
Conserved Domain (NCBI)CCDC167
DMDM Disease mutations154467
Blocks (Seattle)CCDC167
SuperfamilyQ9P0B6
Human Protein Atlas [tissue]ENSG00000198937-CCDC167 [tissue]
Peptide AtlasQ9P0B6
HPRD18561
IPIIPI00000579   IPI00513945   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0B6
IntAct (EBI)Q9P0B6
FunCoupENSG00000198937
BioGRIDCCDC167
STRING (EMBL)CCDC167
ZODIACCCDC167
Ontologies - Pathways
QuickGOQ9P0B6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCCDC167
Atlas of Cancer Signalling NetworkCCDC167
Wikipedia pathwaysCCDC167
Orthology - Evolution
OrthoDB154467
GeneTree (enSembl)ENSG00000198937
Phylogenetic Trees/Animal Genes : TreeFamCCDC167
HOVERGENQ9P0B6
HOGENOMQ9P0B6
Homologs : HomoloGeneCCDC167
Homology/Alignments : Family Browser (UCSC)CCDC167
Gene fusions - Rearrangements
Fusion : QuiverCCDC167
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC167 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC167
dbVarCCDC167
ClinVarCCDC167
1000_GenomesCCDC167 
Exome Variant ServerCCDC167
ExAC (Exome Aggregation Consortium)ENSG00000198937
GNOMAD BrowserENSG00000198937
Varsome BrowserCCDC167
Genetic variants : HAPMAP154467
Genomic Variants (DGV)CCDC167 [DGVbeta]
DECIPHERCCDC167 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC167 
Mutations
ICGC Data PortalCCDC167 
TCGA Data PortalCCDC167 
Broad Tumor PortalCCDC167
OASIS PortalCCDC167 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC167  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC167
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC167
DgiDB (Drug Gene Interaction Database)CCDC167
DoCM (Curated mutations)CCDC167 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC167 (select a term)
intoGenCCDC167
Cancer3DCCDC167(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC167
MedgenCCDC167
Genetic Testing Registry CCDC167
NextProtQ9P0B6 [Medical]
TSGene154467
GENETestsCCDC167
Target ValidationCCDC167
Huge Navigator CCDC167 [HugePedia]
snp3D : Map Gene to Disease154467
BioCentury BCIQCCDC167
ClinGenCCDC167
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154467
Chemical/Pharm GKB GenePA134900129
Clinical trialCCDC167
Miscellaneous
canSAR (ICR)CCDC167 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC167
EVEXCCDC167
GoPubMedCCDC167
iHOPCCDC167
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:39:36 CEST 2018

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