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CCDC168 (coiled-coil domain containing 168)

Identity

Alias_namesC13orf40
chromosome 13 open reading frame 40
Alias_symbol (synonym)FLJ40176
Other alias
HGNC (Hugo) CCDC168
LocusID (NCBI) 643677
Atlas_Id 61513
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 103381717 and ends at 103411422 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC168   26851
Cards
Entrez_Gene (NCBI)CCDC168  643677  coiled-coil domain containing 168
AliasesC13orf40
GeneCards (Weizmann)CCDC168
Ensembl hg19 (Hinxton)ENSG00000175820 [Gene_View]  chr13:103381717-103411422 [Contig_View]  CCDC168 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175820 [Gene_View]  chr13:103381717-103411422 [Contig_View]  CCDC168 [Vega]
ICGC DataPortalENSG00000175820
TCGA cBioPortalCCDC168
AceView (NCBI)CCDC168
Genatlas (Paris)CCDC168
WikiGenes643677
SOURCE (Princeton)CCDC168
Genetics Home Reference (NIH)CCDC168
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC168  -     chr13:103381717-103411422 -  13q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC168  -     13q33.1   [Description]    (hg38-Dec_2013)
EnsemblCCDC168 - 13q33.1 [CytoView hg19]  CCDC168 - 13q33.1 [CytoView hg38]
Mapping of homologs : NCBICCDC168 [Mapview hg19]  CCDC168 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097495 AK125984 AL833499 AL833908
RefSeq transcript (Entrez)NM_001146197
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)CCDC168
Cluster EST : UnigeneHs.368382 [ NCBI ]
CGAP (NCI)Hs.368382
Alternative Splicing GalleryENSG00000175820
Gene ExpressionCCDC168 [ NCBI-GEO ]   CCDC168 [ EBI - ARRAY_EXPRESS ]   CCDC168 [ SEEK ]   CCDC168 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC168 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643677
GTEX Portal (Tissue expression)CCDC168
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDH2
Splice isoforms : SwissVarQ8NDH2
PhosPhoSitePlusQ8NDH2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC168
DMDM Disease mutations643677
Blocks (Seattle)CCDC168
SuperfamilyQ8NDH2
Human Protein AtlasENSG00000175820
Peptide AtlasQ8NDH2
IPIIPI00929313   IPI00736256   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDH2
IntAct (EBI)Q8NDH2
FunCoupENSG00000175820
BioGRIDCCDC168
STRING (EMBL)CCDC168
ZODIACCCDC168
Ontologies - Pathways
QuickGOQ8NDH2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC168
Atlas of Cancer Signalling NetworkCCDC168
Wikipedia pathwaysCCDC168
Orthology - Evolution
OrthoDB643677
GeneTree (enSembl)ENSG00000175820
Phylogenetic Trees/Animal Genes : TreeFamCCDC168
HOVERGENQ8NDH2
HOGENOMQ8NDH2
Homologs : HomoloGeneCCDC168
Homology/Alignments : Family Browser (UCSC)CCDC168
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC168 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC168
dbVarCCDC168
ClinVarCCDC168
1000_GenomesCCDC168 
Exome Variant ServerCCDC168
ExAC (Exome Aggregation Consortium)CCDC168 (select the gene name)
Genetic variants : HAPMAP643677
Genomic Variants (DGV)CCDC168 [DGVbeta]
DECIPHER (Syndromes)13:103381717-103411422  ENSG00000175820
CONAN: Copy Number AnalysisCCDC168 
Mutations
ICGC Data PortalCCDC168 
TCGA Data PortalCCDC168 
Broad Tumor PortalCCDC168
OASIS PortalCCDC168 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC168
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC168
DgiDB (Drug Gene Interaction Database)CCDC168
DoCM (Curated mutations)CCDC168 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC168 (select a term)
intoGenCCDC168
Cancer3DCCDC168(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC168
Genetic Testing Registry CCDC168
NextProtQ8NDH2 [Medical]
TSGene643677
GENETestsCCDC168
Huge Navigator CCDC168 [HugePedia]
snp3D : Map Gene to Disease643677
BioCentury BCIQCCDC168
ClinGenCCDC168
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643677
Chemical/Pharm GKB GenePA165505081
Clinical trialCCDC168
Miscellaneous
canSAR (ICR)CCDC168 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC168
EVEXCCDC168
GoPubMedCCDC168
iHOPCCDC168
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:28 CET 2017

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