Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCDC169-SOHLH2 (CCDC169-SOHLH2 readthrough)

Identity

Alias_namesC13orf38-SOHLH2
C13orf38-SOHLH2 readthrough
Other alias
HGNC (Hugo) CCDC169-SOHLH2
LocusID (NCBI) 100526761
Atlas_Id 61515
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 36168208 and ends at 36297855 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC169-SOHLH2   38866
Cards
Entrez_Gene (NCBI)CCDC169-SOHLH2  100526761  CCDC169-SOHLH2 readthrough
AliasesC13orf38-SOHLH2
GeneCards (Weizmann)CCDC169-SOHLH2
Ensembl hg19 (Hinxton)ENSG00000120669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120669 [Gene_View]  chr13:36168208-36297855 [Contig_View]  CCDC169-SOHLH2 [Vega]
ICGC DataPortalENSG00000120669
TCGA cBioPortalCCDC169-SOHLH2
AceView (NCBI)CCDC169-SOHLH2
Genatlas (Paris)CCDC169-SOHLH2
WikiGenes100526761
SOURCE (Princeton)CCDC169-SOHLH2
Genetics Home Reference (NIH)CCDC169-SOHLH2
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC169-SOHLH2  -     chr13:36168208-36297855 -  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC169-SOHLH2  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC169-SOHLH2 - 13q13.3 [CytoView hg19]  CCDC169-SOHLH2 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBICCDC169-SOHLH2 [Mapview hg19]  CCDC169-SOHLH2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301863
RefSeq transcript (Entrez)NM_001198910
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC169-SOHLH2
Cluster EST : UnigeneHs.124519 [ NCBI ]
CGAP (NCI)Hs.124519
Alternative Splicing GalleryENSG00000120669
Gene ExpressionCCDC169-SOHLH2 [ NCBI-GEO ]   CCDC169-SOHLH2 [ EBI - ARRAY_EXPRESS ]   CCDC169-SOHLH2 [ SEEK ]   CCDC169-SOHLH2 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC169-SOHLH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100526761
GTEX Portal (Tissue expression)CCDC169-SOHLH2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC169-SOHLH2
DMDM Disease mutations100526761
Blocks (Seattle)CCDC169-SOHLH2
Human Protein AtlasENSG00000120669
Protein Interaction databases
FunCoupENSG00000120669
BioGRIDCCDC169-SOHLH2
STRING (EMBL)CCDC169-SOHLH2
ZODIACCCDC169-SOHLH2
Ontologies - Pathways
Huge Navigator CCDC169-SOHLH2 [HugePedia]
snp3D : Map Gene to Disease100526761
BioCentury BCIQCCDC169-SOHLH2
ClinGenCCDC169-SOHLH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100526761
Clinical trialCCDC169-SOHLH2
Miscellaneous
canSAR (ICR)CCDC169-SOHLH2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC169-SOHLH2
EVEXCCDC169-SOHLH2
GoPubMedCCDC169-SOHLH2
iHOPCCDC169-SOHLH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:07 CEST 2017

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