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CCDC169 (coiled-coil domain containing 169)

Identity

Alias_namesC13orf38
chromosome 13 open reading frame 38
Alias_symbol (synonym)RP11-251J8.1
LOC728591
Other alias
HGNC (Hugo) CCDC169
LocusID (NCBI) 728591
Atlas_Id 61514
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 36230775 and ends at 36297855 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCC4 (13q32.1) / CCDC169 (13q13.3)AGFG1 (2q36.3) / CCDC169 (13q13.3)NUP58 (13q12.13) / CCDC169 (13q13.3)
NUPL1 CCDC169ABCC4 CCDC169AGFG1 CCDC169

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC169   34361
Cards
Entrez_Gene (NCBI)CCDC169  728591  coiled-coil domain containing 169
AliasesC13orf38
GeneCards (Weizmann)CCDC169
Ensembl hg19 (Hinxton)ENSG00000242715 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242715 [Gene_View]  chr13:36230775-36297855 [Contig_View]  CCDC169 [Vega]
ICGC DataPortalENSG00000242715
TCGA cBioPortalCCDC169
AceView (NCBI)CCDC169
Genatlas (Paris)CCDC169
WikiGenes728591
SOURCE (Princeton)CCDC169
Genetics Home Reference (NIH)CCDC169
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC169  -     chr13:36230775-36297855 -  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC169  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC169 - 13q13.3 [CytoView hg19]  CCDC169 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBICCDC169 [Mapview hg19]  CCDC169 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA861917 AK023568 AK131058 AK308999 BC013944
RefSeq transcript (Entrez)NM_001144981 NM_001144982 NM_001144983 NM_001144984 NM_001144985 NM_001144986 NM_001198908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC169
Cluster EST : UnigeneHs.730899 [ NCBI ]
CGAP (NCI)Hs.730899
Alternative Splicing GalleryENSG00000242715
Gene ExpressionCCDC169 [ NCBI-GEO ]   CCDC169 [ EBI - ARRAY_EXPRESS ]   CCDC169 [ SEEK ]   CCDC169 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC169 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728591
GTEX Portal (Tissue expression)CCDC169
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNP5
Splice isoforms : SwissVarA6NNP5
PhosPhoSitePlusA6NNP5
Domains : Interpro (EBI)DUF4600   
Domain families : Pfam (Sanger)DUF4600 (PF15372)   
Domain families : Pfam (NCBI)pfam15372   
Conserved Domain (NCBI)CCDC169
DMDM Disease mutations728591
Blocks (Seattle)CCDC169
SuperfamilyA6NNP5
Human Protein AtlasENSG00000242715
Peptide AtlasA6NNP5
IPIIPI00402448   IPI00418385   IPI00973539   IPI00921577   IPI00922530   IPI01010711   IPI00921241   
Protein Interaction databases
DIP (DOE-UCLA)A6NNP5
IntAct (EBI)A6NNP5
FunCoupENSG00000242715
BioGRIDCCDC169
STRING (EMBL)CCDC169
ZODIACCCDC169
Ontologies - Pathways
QuickGOA6NNP5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC169
Atlas of Cancer Signalling NetworkCCDC169
Wikipedia pathwaysCCDC169
Orthology - Evolution
OrthoDB728591
GeneTree (enSembl)ENSG00000242715
Phylogenetic Trees/Animal Genes : TreeFamCCDC169
HOVERGENA6NNP5
HOGENOMA6NNP5
Homologs : HomoloGeneCCDC169
Homology/Alignments : Family Browser (UCSC)CCDC169
Gene fusions - Rearrangements
Fusion: TCGANUPL1 CCDC169
Fusion: TCGAABCC4 CCDC169
Fusion: TCGAAGFG1 CCDC169
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC169 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC169
dbVarCCDC169
ClinVarCCDC169
1000_GenomesCCDC169 
Exome Variant ServerCCDC169
ExAC (Exome Aggregation Consortium)CCDC169 (select the gene name)
Genetic variants : HAPMAP728591
Genomic Variants (DGV)CCDC169 [DGVbeta]
DECIPHERCCDC169 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC169 
Mutations
ICGC Data PortalCCDC169 
TCGA Data PortalCCDC169 
Broad Tumor PortalCCDC169
OASIS PortalCCDC169 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC169  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC169
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC169
DgiDB (Drug Gene Interaction Database)CCDC169
DoCM (Curated mutations)CCDC169 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC169 (select a term)
intoGenCCDC169
Cancer3DCCDC169(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC169
Genetic Testing Registry CCDC169
NextProtA6NNP5 [Medical]
TSGene728591
GENETestsCCDC169
Target ValidationCCDC169
Huge Navigator CCDC169 [HugePedia]
snp3D : Map Gene to Disease728591
BioCentury BCIQCCDC169
ClinGenCCDC169
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728591
Chemical/Pharm GKB GenePA162378105
Clinical trialCCDC169
Miscellaneous
canSAR (ICR)CCDC169 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC169
EVEXCCDC169
GoPubMedCCDC169
iHOPCCDC169
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:07 CEST 2017

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