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CCDC17 (coiled-coil domain containing 17)

Identity

Alias_symbol (synonym)FLJ33084
Other alias-
HGNC (Hugo) CCDC17
LocusID (NCBI) 149483
Atlas_Id 61516
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 45620044 and ends at 45624059 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC17   26574
Cards
Entrez_Gene (NCBI)CCDC17  149483  coiled-coil domain containing 17
Aliases
GeneCards (Weizmann)CCDC17
Ensembl hg19 (Hinxton)ENSG00000159588 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159588 [Gene_View]  chr1:45620044-45624059 [Contig_View]  CCDC17 [Vega]
ICGC DataPortalENSG00000159588
TCGA cBioPortalCCDC17
AceView (NCBI)CCDC17
Genatlas (Paris)CCDC17
WikiGenes149483
SOURCE (Princeton)CCDC17
Genetics Home Reference (NIH)CCDC17
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC17  -     chr1:45620044-45624059 -  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC17  -     1p34.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC17 - 1p34.1 [CytoView hg19]  CCDC17 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBICCDC17 [Mapview hg19]  CCDC17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057646 AK298104 AK303939 AK310879 BC029888
RefSeq transcript (Entrez)NM_001114938 NM_001190182 NM_152500
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC17
Cluster EST : UnigeneHs.18912 [ NCBI ]
CGAP (NCI)Hs.18912
Alternative Splicing GalleryENSG00000159588
Gene ExpressionCCDC17 [ NCBI-GEO ]   CCDC17 [ EBI - ARRAY_EXPRESS ]   CCDC17 [ SEEK ]   CCDC17 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149483
GTEX Portal (Tissue expression)CCDC17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LX7
Splice isoforms : SwissVarQ96LX7
PhosPhoSitePlusQ96LX7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC17
DMDM Disease mutations149483
Blocks (Seattle)CCDC17
SuperfamilyQ96LX7
Human Protein AtlasENSG00000159588
Peptide AtlasQ96LX7
HPRD08155
IPIIPI00855736   IPI00514378   IPI00969556   IPI00065388   IPI00978176   IPI00942097   
Protein Interaction databases
DIP (DOE-UCLA)Q96LX7
IntAct (EBI)Q96LX7
FunCoupENSG00000159588
BioGRIDCCDC17
STRING (EMBL)CCDC17
ZODIACCCDC17
Ontologies - Pathways
QuickGOQ96LX7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC17
Atlas of Cancer Signalling NetworkCCDC17
Wikipedia pathwaysCCDC17
Orthology - Evolution
OrthoDB149483
GeneTree (enSembl)ENSG00000159588
Phylogenetic Trees/Animal Genes : TreeFamCCDC17
HOVERGENQ96LX7
HOGENOMQ96LX7
Homologs : HomoloGeneCCDC17
Homology/Alignments : Family Browser (UCSC)CCDC17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC17
dbVarCCDC17
ClinVarCCDC17
1000_GenomesCCDC17 
Exome Variant ServerCCDC17
ExAC (Exome Aggregation Consortium)CCDC17 (select the gene name)
Genetic variants : HAPMAP149483
Genomic Variants (DGV)CCDC17 [DGVbeta]
DECIPHERCCDC17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC17 
Mutations
ICGC Data PortalCCDC17 
TCGA Data PortalCCDC17 
Broad Tumor PortalCCDC17
OASIS PortalCCDC17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC17
DgiDB (Drug Gene Interaction Database)CCDC17
DoCM (Curated mutations)CCDC17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC17 (select a term)
intoGenCCDC17
Cancer3DCCDC17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC17
Genetic Testing Registry CCDC17
NextProtQ96LX7 [Medical]
TSGene149483
GENETestsCCDC17
Target ValidationCCDC17
Huge Navigator CCDC17 [HugePedia]
snp3D : Map Gene to Disease149483
BioCentury BCIQCCDC17
ClinGenCCDC17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149483
Chemical/Pharm GKB GenePA142672177
Clinical trialCCDC17
Miscellaneous
canSAR (ICR)CCDC17 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC17
EVEXCCDC17
GoPubMedCCDC17
iHOPCCDC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:31 CEST 2017

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