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CCDC170 (coiled-coil domain containing 170)

Identity

Alias_namesC6orf97
chromosome 6 open reading frame 97
Alias_symbol (synonym)FLJ23305
bA282P11.1
Other alias
HGNC (Hugo) CCDC170
LocusID (NCBI) 80129
Atlas_Id 51782
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 151494040 and ends at 151621193 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ESR1 (6q25.1) / CCDC170 (6q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  ESR1/CCDC170 (6q25)
ESR1/CCDC170 (6q25)


External links

Nomenclature
HGNC (Hugo)CCDC170   21177
Cards
Entrez_Gene (NCBI)CCDC170  80129  coiled-coil domain containing 170
AliasesC6orf97; bA282P11.1
GeneCards (Weizmann)CCDC170
Ensembl hg19 (Hinxton)ENSG00000120262 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120262 [Gene_View]  ENSG00000120262 [Sequence]  chr6:151494040-151621193 [Contig_View]  CCDC170 [Vega]
ICGC DataPortalENSG00000120262
TCGA cBioPortalCCDC170
AceView (NCBI)CCDC170
Genatlas (Paris)CCDC170
WikiGenes80129
SOURCE (Princeton)CCDC170
Genetics Home Reference (NIH)CCDC170
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC170  -     chr6:151494040-151621193 +  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC170  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC170 - 6q25.1 [CytoView hg19]  CCDC170 - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBICCDC170 [Mapview hg19]  CCDC170 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026958 AK027300 AK225330 BC035003 BC060803
RefSeq transcript (Entrez)NM_025059
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC170
Cluster EST : UnigeneHs.660044 [ NCBI ]
CGAP (NCI)Hs.660044
Alternative Splicing GalleryENSG00000120262
Gene ExpressionCCDC170 [ NCBI-GEO ]   CCDC170 [ EBI - ARRAY_EXPRESS ]   CCDC170 [ SEEK ]   CCDC170 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC170 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80129
GTEX Portal (Tissue expression)CCDC170
Human Protein AtlasENSG00000120262-CCDC170 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYT3
Splice isoforms : SwissVarQ8IYT3
PhosPhoSitePlusQ8IYT3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC170
DMDM Disease mutations80129
Blocks (Seattle)CCDC170
SuperfamilyQ8IYT3
Human Protein Atlas [tissue]ENSG00000120262-CCDC170 [tissue]
Peptide AtlasQ8IYT3
HPRD10797
IPIIPI00745203   IPI00216412   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYT3
IntAct (EBI)Q8IYT3
FunCoupENSG00000120262
BioGRIDCCDC170
STRING (EMBL)CCDC170
ZODIACCCDC170
Ontologies - Pathways
QuickGOQ8IYT3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC170
Atlas of Cancer Signalling NetworkCCDC170
Wikipedia pathwaysCCDC170
Orthology - Evolution
OrthoDB80129
GeneTree (enSembl)ENSG00000120262
Phylogenetic Trees/Animal Genes : TreeFamCCDC170
HOVERGENQ8IYT3
HOGENOMQ8IYT3
Homologs : HomoloGeneCCDC170
Homology/Alignments : Family Browser (UCSC)CCDC170
Gene fusions - Rearrangements
Fusion : MitelmanESR1/CCDC170 [6q25.1/6q25.1]  [t(6;6)(q25;q25)]  
Fusion : QuiverCCDC170
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC170 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC170
dbVarCCDC170
ClinVarCCDC170
1000_GenomesCCDC170 
Exome Variant ServerCCDC170
ExAC (Exome Aggregation Consortium)ENSG00000120262
GNOMAD BrowserENSG00000120262
Varsome BrowserCCDC170
Genetic variants : HAPMAP80129
Genomic Variants (DGV)CCDC170 [DGVbeta]
DECIPHERCCDC170 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC170 
Mutations
ICGC Data PortalCCDC170 
TCGA Data PortalCCDC170 
Broad Tumor PortalCCDC170
OASIS PortalCCDC170 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC170
BioMutasearch CCDC170
DgiDB (Drug Gene Interaction Database)CCDC170
DoCM (Curated mutations)CCDC170 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC170 (select a term)
intoGenCCDC170
Cancer3DCCDC170(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC170
MedgenCCDC170
Genetic Testing Registry CCDC170
NextProtQ8IYT3 [Medical]
TSGene80129
GENETestsCCDC170
Target ValidationCCDC170
Huge Navigator CCDC170 [HugePedia]
snp3D : Map Gene to Disease80129
BioCentury BCIQCCDC170
ClinGenCCDC170
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80129
Chemical/Pharm GKB GenePA134876442
Clinical trialCCDC170
Miscellaneous
canSAR (ICR)CCDC170 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC170
EVEXCCDC170
GoPubMedCCDC170
iHOPCCDC170
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:56:05 CET 2018

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