Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CCDC171 (coiled-coil domain containing 171)

Identity

Alias_namesC9orf93
chromosome 9 open reading frame 93
Alias_symbol (synonym)FLJ39267
FLJ46740
Em:AL513423.1
bA778P13.1
bA536D16.1
Other alias
HGNC (Hugo) CCDC171
LocusID (NCBI) 203238
Atlas_Id 61517
Location 9p22.3  [Link to chromosome band 9p22]
Location_base_pair Starts at 15553097 and ends at 15971897 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC171 (9p22.3) / SARS (1p13.3)CCNK (14q32.2) / CCDC171 (9p22.3)GNA13 (17q24.1) / CCDC171 (9p22.3)
USP8 (15q21.2) / CCDC171 (9p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC171   29828
Cards
Entrez_Gene (NCBI)CCDC171  203238  coiled-coil domain containing 171
AliasesC9orf93; bA536D16.1; bA778P13.1
GeneCards (Weizmann)CCDC171
Ensembl hg19 (Hinxton) [Gene_View]  chr9:15553097-15971897 [Contig_View]  CCDC171 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:15553097-15971897 [Contig_View]  CCDC171 [Vega]
TCGA cBioPortalCCDC171
AceView (NCBI)CCDC171
Genatlas (Paris)CCDC171
WikiGenes203238
SOURCE (Princeton)CCDC171
Genetics Home Reference (NIH)CCDC171
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC171  -     chr9:15553097-15971897 +  9p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC171  -     9p22.3   [Description]    (hg38-Dec_2013)
EnsemblCCDC171 - 9p22.3 [CytoView hg19]  CCDC171 - 9p22.3 [CytoView hg38]
Mapping of homologs : NCBICCDC171 [Mapview hg19]  CCDC171 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF440401 AK094506 AK096586 AK128581 AK308284
RefSeq transcript (Entrez)NM_173550
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)CCDC171
Cluster EST : UnigeneHs.17267 [ NCBI ]
CGAP (NCI)Hs.17267
Gene ExpressionCCDC171 [ NCBI-GEO ]   CCDC171 [ EBI - ARRAY_EXPRESS ]   CCDC171 [ SEEK ]   CCDC171 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC171 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203238
GTEX Portal (Tissue expression)CCDC171
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6TFL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6TFL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6TFL3
Splice isoforms : SwissVarQ6TFL3
PhosPhoSitePlusQ6TFL3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC171
DMDM Disease mutations203238
Blocks (Seattle)CCDC171
SuperfamilyQ6TFL3
Peptide AtlasQ6TFL3
HPRD10805
IPIIPI00167498   IPI00854607   IPI00877890   IPI00414037   IPI00465394   IPI01013983   IPI00873354   
Protein Interaction databases
DIP (DOE-UCLA)Q6TFL3
IntAct (EBI)Q6TFL3
BioGRIDCCDC171
STRING (EMBL)CCDC171
ZODIACCCDC171
Ontologies - Pathways
QuickGOQ6TFL3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC171
Atlas of Cancer Signalling NetworkCCDC171
Wikipedia pathwaysCCDC171
Orthology - Evolution
OrthoDB203238
Phylogenetic Trees/Animal Genes : TreeFamCCDC171
HOVERGENQ6TFL3
HOGENOMQ6TFL3
Homologs : HomoloGeneCCDC171
Homology/Alignments : Family Browser (UCSC)CCDC171
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC171 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC171
dbVarCCDC171
ClinVarCCDC171
1000_GenomesCCDC171 
Exome Variant ServerCCDC171
ExAC (Exome Aggregation Consortium)CCDC171 (select the gene name)
Genetic variants : HAPMAP203238
Genomic Variants (DGV)CCDC171 [DGVbeta]
DECIPHER (Syndromes)9:15553097-15971897  
CONAN: Copy Number AnalysisCCDC171 
Mutations
ICGC Data PortalCCDC171 
TCGA Data PortalCCDC171 
Broad Tumor PortalCCDC171
OASIS PortalCCDC171 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC171
BioMutasearch CCDC171
DgiDB (Drug Gene Interaction Database)CCDC171
DoCM (Curated mutations)CCDC171 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC171 (select a term)
intoGenCCDC171
Cancer3DCCDC171(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC171
Genetic Testing Registry CCDC171
NextProtQ6TFL3 [Medical]
TSGene203238
GENETestsCCDC171
Huge Navigator CCDC171 [HugePedia]
snp3D : Map Gene to Disease203238
BioCentury BCIQCCDC171
ClinGenCCDC171
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203238
Chemical/Pharm GKB GenePA134921892
Clinical trialCCDC171
Miscellaneous
canSAR (ICR)CCDC171 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC171
EVEXCCDC171
GoPubMedCCDC171
iHOPCCDC171
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:29 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.