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CCDC171 (coiled-coil domain containing 171)

Identity

Alias (NCBI)C9orf93
bA536D16.1
bA778P13.1
HGNC (Hugo) CCDC171
HGNC Alias symbFLJ39267
FLJ46740
Em:AL513423.1
bA778P13.1
bA536D16.1
HGNC Alias namemyosin tail domain containing protein
HGNC Previous nameC9orf93
HGNC Previous namechromosome 9 open reading frame 93
LocusID (NCBI) 203238
Atlas_Id 61517
Location 9p22.3  [Link to chromosome band 9p22]
Location_base_pair Starts at 15553043 and ends at 15974037 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC171 (9p22.3) / SARS (1p13.3)CCNK (14q32.2) / CCDC171 (9p22.3)GNA13 (17q24.1) / CCDC171 (9p22.3)
USP8 (15q21.2) / CCDC171 (9p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCDC171   29828
Cards
Entrez_Gene (NCBI)CCDC171    coiled-coil domain containing 171
AliasesC9orf93; bA536D16.1; bA778P13.1
GeneCards (Weizmann)CCDC171
Ensembl hg19 (Hinxton)ENSG00000164989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164989 [Gene_View]  ENSG00000164989 [Sequence]  chr9:15553043-15974037 [Contig_View]  CCDC171 [Vega]
ICGC DataPortalENSG00000164989
TCGA cBioPortalCCDC171
AceView (NCBI)CCDC171
Genatlas (Paris)CCDC171
SOURCE (Princeton)CCDC171
Genetics Home Reference (NIH)CCDC171
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC171  -     chr9:15553043-15974037 +  9p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC171  -     9p22.3   [Description]    (hg19-Feb_2009)
GoldenPathCCDC171 - 9p22.3 [CytoView hg19]  CCDC171 - 9p22.3 [CytoView hg38]
ImmunoBaseENSG00000164989
Genome Data Viewer NCBICCDC171 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF440401 AI243499 AK094506 AK096586 AK128581
RefSeq transcript (Entrez)NM_001348002 NM_001355547 NM_173550
Consensus coding sequences : CCDS (NCBI)CCDC171
Gene ExpressionCCDC171 [ NCBI-GEO ]   CCDC171 [ EBI - ARRAY_EXPRESS ]   CCDC171 [ SEEK ]   CCDC171 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC171 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC171 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203238
GTEX Portal (Tissue expression)CCDC171
Human Protein AtlasENSG00000164989-CCDC171 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6TFL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6TFL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6TFL3
PhosPhoSitePlusQ6TFL3
Domains : Interpro (EBI)CCDC171   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC171
SuperfamilyQ6TFL3
AlphaFold pdb e-kbQ6TFL3   
Human Protein Atlas [tissue]ENSG00000164989-CCDC171 [tissue]
HPRD10805
Protein Interaction databases
DIP (DOE-UCLA)Q6TFL3
IntAct (EBI)Q6TFL3
BioGRIDCCDC171
STRING (EMBL)CCDC171
ZODIACCCDC171
Ontologies - Pathways
QuickGOQ6TFL3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC171
Atlas of Cancer Signalling NetworkCCDC171
Wikipedia pathwaysCCDC171
Orthology - Evolution
OrthoDB203238
GeneTree (enSembl)ENSG00000164989
Phylogenetic Trees/Animal Genes : TreeFamCCDC171
Homologs : HomoloGeneCCDC171
Homology/Alignments : Family Browser (UCSC)CCDC171
Gene fusions - Rearrangements
Fusion : QuiverCCDC171
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC171 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC171
dbVarCCDC171
ClinVarCCDC171
MonarchCCDC171
1000_GenomesCCDC171 
Exome Variant ServerCCDC171
GNOMAD BrowserENSG00000164989
Varsome BrowserCCDC171
ACMGCCDC171 variants
VarityQ6TFL3
Genomic Variants (DGV)CCDC171 [DGVbeta]
DECIPHERCCDC171 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC171 
Mutations
ICGC Data PortalCCDC171 
TCGA Data PortalCCDC171 
Broad Tumor PortalCCDC171
OASIS PortalCCDC171 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC171  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC171
Mutations and Diseases : HGMDCCDC171
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC171
DgiDB (Drug Gene Interaction Database)CCDC171
DoCM (Curated mutations)CCDC171
CIViC (Clinical Interpretations of Variants in Cancer)CCDC171
Cancer3DCCDC171
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC171
MedgenCCDC171
Genetic Testing Registry CCDC171
NextProtQ6TFL3 [Medical]
GENETestsCCDC171
Target ValidationCCDC171
Huge Navigator CCDC171 [HugePedia]
ClinGenCCDC171
Clinical trials, drugs, therapy
MyCancerGenomeCCDC171
Protein Interactions : CTDCCDC171
Pharm GKB GenePA134921892
PharosQ6TFL3
Clinical trialCCDC171
Miscellaneous
canSAR (ICR)CCDC171
HarmonizomeCCDC171
DataMed IndexCCDC171
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC171
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:09 CEST 2021

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