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CCDC172 (coiled-coil domain containing 172)

Identity

Alias (NCBI)C10orf96
HGNC (Hugo) CCDC172
HGNC Alias symbMGC35062
HGNC Previous nameC10orf96
HGNC Previous namechromosome 10 open reading frame 96
LocusID (NCBI) 374355
Atlas_Id 61518
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 116324448 and ends at 116380029 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KAT6B (10q22.2) / CCDC172 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CCDC172   30524
Cards
Entrez_Gene (NCBI)CCDC172    coiled-coil domain containing 172
AliasesC10orf96
GeneCards (Weizmann)CCDC172
Ensembl hg19 (Hinxton)ENSG00000182645 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182645 [Gene_View]  ENSG00000182645 [Sequence]  chr10:116324448-116380029 [Contig_View]  CCDC172 [Vega]
ICGC DataPortalENSG00000182645
TCGA cBioPortalCCDC172
AceView (NCBI)CCDC172
Genatlas (Paris)CCDC172
SOURCE (Princeton)CCDC172
Genetics Home Reference (NIH)CCDC172
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC172  -     chr10:116324448-116380029 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC172  -     10q25.3   [Description]    (hg19-Feb_2009)
GoldenPathCCDC172 - 10q25.3 [CytoView hg19]  CCDC172 - 10q25.3 [CytoView hg38]
ImmunoBaseENSG00000182645
Genome Data Viewer NCBICCDC172 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ457798 BC044830
RefSeq transcript (Entrez)NM_198515
Consensus coding sequences : CCDS (NCBI)CCDC172
Gene ExpressionCCDC172 [ NCBI-GEO ]   CCDC172 [ EBI - ARRAY_EXPRESS ]   CCDC172 [ SEEK ]   CCDC172 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC172 [ Firebrowse - Broad ]
GenevisibleExpression of CCDC172 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374355
GTEX Portal (Tissue expression)CCDC172
Human Protein AtlasENSG00000182645-CCDC172 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7W6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7W6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7W6
PhosPhoSitePlusP0C7W6
Domains : Interpro (EBI)CCDC172   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC172
SuperfamilyP0C7W6
AlphaFold pdb e-kbP0C7W6   
Human Protein Atlas [tissue]ENSG00000182645-CCDC172 [tissue]
HPRD18604
Protein Interaction databases
DIP (DOE-UCLA)P0C7W6
IntAct (EBI)P0C7W6
BioGRIDCCDC172
STRING (EMBL)CCDC172
ZODIACCCDC172
Ontologies - Pathways
QuickGOP0C7W6
Ontology : AmiGOprotein binding  cytoplasm  sperm midpiece  
Ontology : EGO-EBIprotein binding  cytoplasm  sperm midpiece  
NDEx NetworkCCDC172
Atlas of Cancer Signalling NetworkCCDC172
Wikipedia pathwaysCCDC172
Orthology - Evolution
OrthoDB374355
GeneTree (enSembl)ENSG00000182645
Phylogenetic Trees/Animal Genes : TreeFamCCDC172
Homologs : HomoloGeneCCDC172
Homology/Alignments : Family Browser (UCSC)CCDC172
Gene fusions - Rearrangements
Fusion : QuiverCCDC172
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC172 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC172
dbVarCCDC172
ClinVarCCDC172
MonarchCCDC172
1000_GenomesCCDC172 
Exome Variant ServerCCDC172
GNOMAD BrowserENSG00000182645
Varsome BrowserCCDC172
ACMGCCDC172 variants
VarityP0C7W6
Genomic Variants (DGV)CCDC172 [DGVbeta]
DECIPHERCCDC172 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC172 
Mutations
ICGC Data PortalCCDC172 
TCGA Data PortalCCDC172 
Broad Tumor PortalCCDC172
OASIS PortalCCDC172 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC172  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCCDC172
Mutations and Diseases : HGMDCCDC172
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCCDC172
DgiDB (Drug Gene Interaction Database)CCDC172
DoCM (Curated mutations)CCDC172
CIViC (Clinical Interpretations of Variants in Cancer)CCDC172
Cancer3DCCDC172
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC172
MedgenCCDC172
Genetic Testing Registry CCDC172
NextProtP0C7W6 [Medical]
GENETestsCCDC172
Target ValidationCCDC172
Huge Navigator CCDC172 [HugePedia]
ClinGenCCDC172
Clinical trials, drugs, therapy
MyCancerGenomeCCDC172
Protein Interactions : CTDCCDC172
Pharm GKB GenePA134867240
PharosP0C7W6
Clinical trialCCDC172
Miscellaneous
canSAR (ICR)CCDC172
HarmonizomeCCDC172
DataMed IndexCCDC172
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCCDC172
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:45:09 CEST 2021

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