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CCDC172 (coiled-coil domain containing 172)

Identity

Alias_namesC10orf96
chromosome 10 open reading frame 96
Alias_symbol (synonym)MGC35062
Other alias
HGNC (Hugo) CCDC172
LocusID (NCBI) 374355
Atlas_Id 61518
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 116324428 and ends at 116380029 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KAT6B (10q22.2) / CCDC172 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC172   30524
Cards
Entrez_Gene (NCBI)CCDC172  374355  coiled-coil domain containing 172
AliasesC10orf96
GeneCards (Weizmann)CCDC172
Ensembl hg19 (Hinxton)ENSG00000182645 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182645 [Gene_View]  chr10:116324428-116380029 [Contig_View]  CCDC172 [Vega]
ICGC DataPortalENSG00000182645
TCGA cBioPortalCCDC172
AceView (NCBI)CCDC172
Genatlas (Paris)CCDC172
WikiGenes374355
SOURCE (Princeton)CCDC172
Genetics Home Reference (NIH)CCDC172
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC172  -     chr10:116324428-116380029 +  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC172  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC172 - 10q25.3 [CytoView hg19]  CCDC172 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBICCDC172 [Mapview hg19]  CCDC172 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ457798 BC044830 HQ448522
RefSeq transcript (Entrez)NM_198515
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC172
Cluster EST : UnigeneHs.233407 [ NCBI ]
CGAP (NCI)Hs.233407
Alternative Splicing GalleryENSG00000182645
Gene ExpressionCCDC172 [ NCBI-GEO ]   CCDC172 [ EBI - ARRAY_EXPRESS ]   CCDC172 [ SEEK ]   CCDC172 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC172 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374355
GTEX Portal (Tissue expression)CCDC172
Human Protein AtlasENSG00000182645-CCDC172 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7W6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7W6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7W6
Splice isoforms : SwissVarP0C7W6
PhosPhoSitePlusP0C7W6
Domains : Interpro (EBI)CCDC172   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC172
DMDM Disease mutations374355
Blocks (Seattle)CCDC172
SuperfamilyP0C7W6
Human Protein Atlas [tissue]ENSG00000182645-CCDC172 [tissue]
Peptide AtlasP0C7W6
HPRD18604
IPIIPI00329356   IPI00643292   
Protein Interaction databases
DIP (DOE-UCLA)P0C7W6
IntAct (EBI)P0C7W6
FunCoupENSG00000182645
BioGRIDCCDC172
STRING (EMBL)CCDC172
ZODIACCCDC172
Ontologies - Pathways
QuickGOP0C7W6
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCCDC172
Atlas of Cancer Signalling NetworkCCDC172
Wikipedia pathwaysCCDC172
Orthology - Evolution
OrthoDB374355
GeneTree (enSembl)ENSG00000182645
Phylogenetic Trees/Animal Genes : TreeFamCCDC172
HOVERGENP0C7W6
HOGENOMP0C7W6
Homologs : HomoloGeneCCDC172
Homology/Alignments : Family Browser (UCSC)CCDC172
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC172
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC172 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC172
dbVarCCDC172
ClinVarCCDC172
1000_GenomesCCDC172 
Exome Variant ServerCCDC172
ExAC (Exome Aggregation Consortium)ENSG00000182645
GNOMAD BrowserENSG00000182645
Genetic variants : HAPMAP374355
Genomic Variants (DGV)CCDC172 [DGVbeta]
DECIPHERCCDC172 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC172 
Mutations
ICGC Data PortalCCDC172 
TCGA Data PortalCCDC172 
Broad Tumor PortalCCDC172
OASIS PortalCCDC172 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC172
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC172
DgiDB (Drug Gene Interaction Database)CCDC172
DoCM (Curated mutations)CCDC172 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC172 (select a term)
intoGenCCDC172
Cancer3DCCDC172(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC172
MedgenCCDC172
Genetic Testing Registry CCDC172
NextProtP0C7W6 [Medical]
TSGene374355
GENETestsCCDC172
Target ValidationCCDC172
Huge Navigator CCDC172 [HugePedia]
snp3D : Map Gene to Disease374355
BioCentury BCIQCCDC172
ClinGenCCDC172
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374355
Chemical/Pharm GKB GenePA134867240
Clinical trialCCDC172
Miscellaneous
canSAR (ICR)CCDC172 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC172
EVEXCCDC172
GoPubMedCCDC172
iHOPCCDC172
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:21:20 CET 2017

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