Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCDC173 (coiled-coil domain containing 173)

Identity

Alias_namesC2orf77
chromosome 2 open reading frame 77
Alias_symbol (synonym)LOC129881
Other alias
HGNC (Hugo) CCDC173
LocusID (NCBI) 129881
Atlas_Id 61519
Location 2q31.1  [Link to chromosome band 2q31]
Location_base_pair Starts at 169645425 and ends at 169694421 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC173   25064
Cards
Entrez_Gene (NCBI)CCDC173  129881  coiled-coil domain containing 173
AliasesC2orf77
GeneCards (Weizmann)CCDC173
Ensembl hg19 (Hinxton)ENSG00000154479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154479 [Gene_View]  chr2:169645425-169694421 [Contig_View]  CCDC173 [Vega]
ICGC DataPortalENSG00000154479
TCGA cBioPortalCCDC173
AceView (NCBI)CCDC173
Genatlas (Paris)CCDC173
WikiGenes129881
SOURCE (Princeton)CCDC173
Genetics Home Reference (NIH)CCDC173
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC173  -     chr2:169645425-169694421 -  2q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC173  -     2q31.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC173 - 2q31.1 [CytoView hg19]  CCDC173 - 2q31.1 [CytoView hg38]
Mapping of homologs : NCBICCDC173 [Mapview hg19]  CCDC173 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301851 BC015980 BC065905 BC117445 BQ432665
RefSeq transcript (Entrez)NM_001085447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC173
Cluster EST : UnigeneHs.370111 [ NCBI ]
CGAP (NCI)Hs.370111
Alternative Splicing GalleryENSG00000154479
Gene ExpressionCCDC173 [ NCBI-GEO ]   CCDC173 [ EBI - ARRAY_EXPRESS ]   CCDC173 [ SEEK ]   CCDC173 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC173 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129881
GTEX Portal (Tissue expression)CCDC173
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VFZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VFZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VFZ6
Splice isoforms : SwissVarQ0VFZ6
PhosPhoSitePlusQ0VFZ6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC173
DMDM Disease mutations129881
Blocks (Seattle)CCDC173
SuperfamilyQ0VFZ6
Human Protein AtlasENSG00000154479
Peptide AtlasQ0VFZ6
IPIIPI00739770   IPI00916427   IPI00916566   
Protein Interaction databases
DIP (DOE-UCLA)Q0VFZ6
IntAct (EBI)Q0VFZ6
FunCoupENSG00000154479
BioGRIDCCDC173
STRING (EMBL)CCDC173
ZODIACCCDC173
Ontologies - Pathways
QuickGOQ0VFZ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC173
Atlas of Cancer Signalling NetworkCCDC173
Wikipedia pathwaysCCDC173
Orthology - Evolution
OrthoDB129881
GeneTree (enSembl)ENSG00000154479
Phylogenetic Trees/Animal Genes : TreeFamCCDC173
HOVERGENQ0VFZ6
HOGENOMQ0VFZ6
Homologs : HomoloGeneCCDC173
Homology/Alignments : Family Browser (UCSC)CCDC173
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC173 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC173
dbVarCCDC173
ClinVarCCDC173
1000_GenomesCCDC173 
Exome Variant ServerCCDC173
ExAC (Exome Aggregation Consortium)CCDC173 (select the gene name)
Genetic variants : HAPMAP129881
Genomic Variants (DGV)CCDC173 [DGVbeta]
DECIPHERCCDC173 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC173 
Mutations
ICGC Data PortalCCDC173 
TCGA Data PortalCCDC173 
Broad Tumor PortalCCDC173
OASIS PortalCCDC173 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC173
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC173
DgiDB (Drug Gene Interaction Database)CCDC173
DoCM (Curated mutations)CCDC173 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC173 (select a term)
intoGenCCDC173
Cancer3DCCDC173(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC173
Genetic Testing Registry CCDC173
NextProtQ0VFZ6 [Medical]
TSGene129881
GENETestsCCDC173
Target ValidationCCDC173
Huge Navigator CCDC173 [HugePedia]
snp3D : Map Gene to Disease129881
BioCentury BCIQCCDC173
ClinGenCCDC173
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129881
Chemical/Pharm GKB GenePA162379577
Clinical trialCCDC173
Miscellaneous
canSAR (ICR)CCDC173 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC173
EVEXCCDC173
GoPubMedCCDC173
iHOPCCDC173
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:04:08 CEST 2017

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