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CCDC174 (coiled-coil domain containing 174)

Identity

Alias_namesC3orf19
chromosome 3 open reading frame 19
Alias_symbol (synonym)FLJ33839
Other aliasHSPC212
IHPM
IHPMR
HGNC (Hugo) CCDC174
LocusID (NCBI) 51244
Atlas_Id 61520
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 14651746 and ends at 14672659 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC174   28033
Cards
Entrez_Gene (NCBI)CCDC174  51244  coiled-coil domain containing 174
AliasesC3orf19; HSPC212; IHPM; IHPMR
GeneCards (Weizmann)CCDC174
Ensembl hg19 (Hinxton)ENSG00000154781 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154781 [Gene_View]  chr3:14651746-14672659 [Contig_View]  CCDC174 [Vega]
ICGC DataPortalENSG00000154781
TCGA cBioPortalCCDC174
AceView (NCBI)CCDC174
Genatlas (Paris)CCDC174
WikiGenes51244
SOURCE (Princeton)CCDC174
Genetics Home Reference (NIH)CCDC174
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC174  -     chr3:14651746-14672659 +  3p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC174  -     3p25.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC174 - 3p25.1 [CytoView hg19]  CCDC174 - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBICCDC174 [Mapview hg19]  CCDC174 [Mapview hg38]
OMIM616735   616816   
Gene and transcription
Genbank (Entrez)AF151046 AI797763 AK091158 AK309525 BC005199
RefSeq transcript (Entrez)NM_016474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC174
Cluster EST : UnigeneHs.517820 [ NCBI ]
CGAP (NCI)Hs.517820
Alternative Splicing GalleryENSG00000154781
Gene ExpressionCCDC174 [ NCBI-GEO ]   CCDC174 [ EBI - ARRAY_EXPRESS ]   CCDC174 [ SEEK ]   CCDC174 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC174 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51244
GTEX Portal (Tissue expression)CCDC174
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PII3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PII3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PII3
Splice isoforms : SwissVarQ6PII3
PhosPhoSitePlusQ6PII3
Domains : Interpro (EBI)DUF4078   
Domain families : Pfam (Sanger)DUF4078 (PF13300)   
Domain families : Pfam (NCBI)pfam13300   
Conserved Domain (NCBI)CCDC174
DMDM Disease mutations51244
Blocks (Seattle)CCDC174
SuperfamilyQ6PII3
Human Protein AtlasENSG00000154781
Peptide AtlasQ6PII3
HPRD12820
IPIIPI00009377   IPI00187003   IPI00925917   
Protein Interaction databases
DIP (DOE-UCLA)Q6PII3
IntAct (EBI)Q6PII3
FunCoupENSG00000154781
BioGRIDCCDC174
STRING (EMBL)CCDC174
ZODIACCCDC174
Ontologies - Pathways
QuickGOQ6PII3
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  
NDEx NetworkCCDC174
Atlas of Cancer Signalling NetworkCCDC174
Wikipedia pathwaysCCDC174
Orthology - Evolution
OrthoDB51244
GeneTree (enSembl)ENSG00000154781
Phylogenetic Trees/Animal Genes : TreeFamCCDC174
HOVERGENQ6PII3
HOGENOMQ6PII3
Homologs : HomoloGeneCCDC174
Homology/Alignments : Family Browser (UCSC)CCDC174
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC174 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC174
dbVarCCDC174
ClinVarCCDC174
1000_GenomesCCDC174 
Exome Variant ServerCCDC174
ExAC (Exome Aggregation Consortium)CCDC174 (select the gene name)
Genetic variants : HAPMAP51244
Genomic Variants (DGV)CCDC174 [DGVbeta]
DECIPHERCCDC174 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC174 
Mutations
ICGC Data PortalCCDC174 
TCGA Data PortalCCDC174 
Broad Tumor PortalCCDC174
OASIS PortalCCDC174 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC174
BioMutasearch CCDC174
DgiDB (Drug Gene Interaction Database)CCDC174
DoCM (Curated mutations)CCDC174 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC174 (select a term)
intoGenCCDC174
Cancer3DCCDC174(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616735    616816   
Orphanet
MedgenCCDC174
Genetic Testing Registry CCDC174
NextProtQ6PII3 [Medical]
TSGene51244
GENETestsCCDC174
Target ValidationCCDC174
Huge Navigator CCDC174 [HugePedia]
snp3D : Map Gene to Disease51244
BioCentury BCIQCCDC174
ClinGenCCDC174
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51244
Chemical/Pharm GKB GenePA134914840
Clinical trialCCDC174
Miscellaneous
canSAR (ICR)CCDC174 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC174
EVEXCCDC174
GoPubMedCCDC174
iHOPCCDC174
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:31 CEST 2017

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