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CCDC175 (coiled-coil domain containing 175)

Identity

Alias_namesC14orf38
chromosome 14 open reading frame 38
Other aliasc14_5395
HGNC (Hugo) CCDC175
LocusID (NCBI) 729665
Atlas_Id 61521
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 59505067 and ends at 59576831 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SRP54 (14q13.2) / CCDC175 (14q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC175   19847
Cards
Entrez_Gene (NCBI)CCDC175  729665  coiled-coil domain containing 175
AliasesC14orf38; c14_5395
GeneCards (Weizmann)CCDC175
Ensembl hg19 (Hinxton)ENSG00000151838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151838 [Gene_View]  chr14:59505067-59576831 [Contig_View]  CCDC175 [Vega]
ICGC DataPortalENSG00000151838
TCGA cBioPortalCCDC175
AceView (NCBI)CCDC175
Genatlas (Paris)CCDC175
WikiGenes729665
SOURCE (Princeton)CCDC175
Genetics Home Reference (NIH)CCDC175
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC175  -     chr14:59505067-59576831 -  14q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC175  -     14q23.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC175 - 14q23.1 [CytoView hg19]  CCDC175 - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBICCDC175 [Mapview hg19]  CCDC175 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164399
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC175
Cluster EST : UnigeneHs.29706 [ NCBI ]
CGAP (NCI)Hs.29706
Alternative Splicing GalleryENSG00000151838
Gene ExpressionCCDC175 [ NCBI-GEO ]   CCDC175 [ EBI - ARRAY_EXPRESS ]   CCDC175 [ SEEK ]   CCDC175 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC175 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729665
GTEX Portal (Tissue expression)CCDC175
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C221   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C221  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C221
Splice isoforms : SwissVarP0C221
PhosPhoSitePlusP0C221
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC175
DMDM Disease mutations729665
Blocks (Seattle)CCDC175
SuperfamilyP0C221
Human Protein AtlasENSG00000151838
Peptide AtlasP0C221
IPIIPI00401829   IPI01012875   
Protein Interaction databases
DIP (DOE-UCLA)P0C221
IntAct (EBI)P0C221
FunCoupENSG00000151838
BioGRIDCCDC175
STRING (EMBL)CCDC175
ZODIACCCDC175
Ontologies - Pathways
QuickGOP0C221
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC175
Atlas of Cancer Signalling NetworkCCDC175
Wikipedia pathwaysCCDC175
Orthology - Evolution
OrthoDB729665
GeneTree (enSembl)ENSG00000151838
Phylogenetic Trees/Animal Genes : TreeFamCCDC175
HOVERGENP0C221
HOGENOMP0C221
Homologs : HomoloGeneCCDC175
Homology/Alignments : Family Browser (UCSC)CCDC175
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC175 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC175
dbVarCCDC175
ClinVarCCDC175
1000_GenomesCCDC175 
Exome Variant ServerCCDC175
ExAC (Exome Aggregation Consortium)CCDC175 (select the gene name)
Genetic variants : HAPMAP729665
Genomic Variants (DGV)CCDC175 [DGVbeta]
DECIPHERCCDC175 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC175 
Mutations
ICGC Data PortalCCDC175 
TCGA Data PortalCCDC175 
Broad Tumor PortalCCDC175
OASIS PortalCCDC175 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC175  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC175
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC175
DgiDB (Drug Gene Interaction Database)CCDC175
DoCM (Curated mutations)CCDC175 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC175 (select a term)
intoGenCCDC175
Cancer3DCCDC175(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC175
Genetic Testing Registry CCDC175
NextProtP0C221 [Medical]
TSGene729665
GENETestsCCDC175
Target ValidationCCDC175
Huge Navigator CCDC175 [HugePedia]
snp3D : Map Gene to Disease729665
BioCentury BCIQCCDC175
ClinGenCCDC175
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729665
Chemical/Pharm GKB GenePA134933838
Clinical trialCCDC175
Miscellaneous
canSAR (ICR)CCDC175 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC175
EVEXCCDC175
GoPubMedCCDC175
iHOPCCDC175
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:32 CEST 2017

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