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CCDC178 (coiled-coil domain containing 178)

Identity

Other aliasC18orf34
HGNC (Hugo) CCDC178
LocusID (NCBI) 374864
Atlas_Id 57067
Location 18q12.1  [Link to chromosome band 18q12]
Location_base_pair Starts at 32937402 and ends at 33136077 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MTERF3 (8q22.1) / CCDC178 (18q12.1)PHF21A (11p11.2) / CCDC178 (18q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC178   29588
Cards
Entrez_Gene (NCBI)CCDC178  374864  coiled-coil domain containing 178
AliasesC18orf34
GeneCards (Weizmann)CCDC178
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:32937402-33136077 [Contig_View]  CCDC178 [Vega]
TCGA cBioPortalCCDC178
AceView (NCBI)CCDC178
Genatlas (Paris)CCDC178
WikiGenes374864
SOURCE (Princeton)CCDC178
Genetics Home Reference (NIH)CCDC178
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC178  -     chr18:32937402-33136077 -  18q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC178  -     18q12.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC178 - 18q12.1 [CytoView hg19]  CCDC178 - 18q12.1 [CytoView hg38]
Mapping of homologs : NCBICCDC178 [Mapview hg19]  CCDC178 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000027 AK126038 AK129955 BC062719 BC091517
RefSeq transcript (Entrez)NM_001105528 NM_001308126 NM_198995
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC178
Cluster EST : UnigeneHs.115461 [ NCBI ]
CGAP (NCI)Hs.115461
Gene ExpressionCCDC178 [ NCBI-GEO ]   CCDC178 [ EBI - ARRAY_EXPRESS ]   CCDC178 [ SEEK ]   CCDC178 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC178 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374864
GTEX Portal (Tissue expression)CCDC178
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BJE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BJE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BJE1
Splice isoforms : SwissVarQ5BJE1
PhosPhoSitePlusQ5BJE1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC178
DMDM Disease mutations374864
Blocks (Seattle)CCDC178
SuperfamilyQ5BJE1
Peptide AtlasQ5BJE1
IPIIPI00719689   IPI00556193   IPI00395603   IPI00922528   IPI00854586   
Protein Interaction databases
DIP (DOE-UCLA)Q5BJE1
IntAct (EBI)Q5BJE1
BioGRIDCCDC178
STRING (EMBL)CCDC178
ZODIACCCDC178
Ontologies - Pathways
QuickGOQ5BJE1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC178
Atlas of Cancer Signalling NetworkCCDC178
Wikipedia pathwaysCCDC178
Orthology - Evolution
OrthoDB374864
Phylogenetic Trees/Animal Genes : TreeFamCCDC178
HOVERGENQ5BJE1
HOGENOMQ5BJE1
Homologs : HomoloGeneCCDC178
Homology/Alignments : Family Browser (UCSC)CCDC178
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC178
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC178 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC178
dbVarCCDC178
ClinVarCCDC178
1000_GenomesCCDC178 
Exome Variant ServerCCDC178
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP374864
Genomic Variants (DGV)CCDC178 [DGVbeta]
DECIPHERCCDC178 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC178 
Mutations
ICGC Data PortalCCDC178 
TCGA Data PortalCCDC178 
Broad Tumor PortalCCDC178
OASIS PortalCCDC178 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC178
BioMutasearch CCDC178
DgiDB (Drug Gene Interaction Database)CCDC178
DoCM (Curated mutations)CCDC178 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC178 (select a term)
intoGenCCDC178
Cancer3DCCDC178(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC178
MedgenCCDC178
Genetic Testing Registry CCDC178
NextProtQ5BJE1 [Medical]
TSGene374864
GENETestsCCDC178
Target ValidationCCDC178
Huge Navigator CCDC178 [HugePedia]
snp3D : Map Gene to Disease374864
BioCentury BCIQCCDC178
ClinGenCCDC178
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374864
Chemical/Pharm GKB GenePA134979792
Clinical trialCCDC178
Miscellaneous
canSAR (ICR)CCDC178 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC178
EVEXCCDC178
GoPubMedCCDC178
iHOPCCDC178
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:06:14 CET 2017

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