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CCDC179 (coiled-coil domain containing 179)

Identity

Other alias-
HGNC (Hugo) CCDC179
LocusID (NCBI) 100500938
Atlas_Id 61525
Location 11p14.3  [Link to chromosome band 11p14]
Location_base_pair Starts at 22868468 and ends at 22881972 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC179   44653
Cards
Entrez_Gene (NCBI)CCDC179  100500938  coiled-coil domain containing 179
Aliases
GeneCards (Weizmann)CCDC179
Ensembl hg19 (Hinxton)ENSG00000255359 [Gene_View]  chr11:22868468-22881972 [Contig_View]  CCDC179 [Vega]
Ensembl hg38 (Hinxton)ENSG00000255359 [Gene_View]  chr11:22868468-22881972 [Contig_View]  CCDC179 [Vega]
ICGC DataPortalENSG00000255359
TCGA cBioPortalCCDC179
AceView (NCBI)CCDC179
Genatlas (Paris)CCDC179
WikiGenes100500938
SOURCE (Princeton)CCDC179
Genetics Home Reference (NIH)CCDC179
Genomic and cartography
GoldenPath hg19 (UCSC)CCDC179  -     chr11:22868468-22881972 -  11p14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CCDC179  -     11p14.3   [Description]    (hg38-Dec_2013)
EnsemblCCDC179 - 11p14.3 [CytoView hg19]  CCDC179 - 11p14.3 [CytoView hg38]
Mapping of homologs : NCBICCDC179 [Mapview hg19]  CCDC179 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI651461
RefSeq transcript (Entrez)NM_001195637
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)CCDC179
Cluster EST : UnigeneHs.555029 [ NCBI ]
CGAP (NCI)Hs.555029
Alternative Splicing GalleryENSG00000255359
Gene ExpressionCCDC179 [ NCBI-GEO ]   CCDC179 [ EBI - ARRAY_EXPRESS ]   CCDC179 [ SEEK ]   CCDC179 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC179 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100500938
GTEX Portal (Tissue expression)CCDC179
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BU77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BU77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BU77
Splice isoforms : SwissVarH3BU77
PhosPhoSitePlusH3BU77
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC179
DMDM Disease mutations100500938
Blocks (Seattle)CCDC179
SuperfamilyH3BU77
Human Protein AtlasENSG00000255359
Peptide AtlasH3BU77
IPIIPI00977521   
Protein Interaction databases
DIP (DOE-UCLA)H3BU77
IntAct (EBI)H3BU77
FunCoupENSG00000255359
BioGRIDCCDC179
STRING (EMBL)CCDC179
ZODIACCCDC179
Ontologies - Pathways
QuickGOH3BU77
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC179
Atlas of Cancer Signalling NetworkCCDC179
Wikipedia pathwaysCCDC179
Orthology - Evolution
OrthoDB100500938
GeneTree (enSembl)ENSG00000255359
Phylogenetic Trees/Animal Genes : TreeFamCCDC179
HOVERGENH3BU77
HOGENOMH3BU77
Homologs : HomoloGeneCCDC179
Homology/Alignments : Family Browser (UCSC)CCDC179
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC179 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC179
dbVarCCDC179
ClinVarCCDC179
1000_GenomesCCDC179 
Exome Variant ServerCCDC179
ExAC (Exome Aggregation Consortium)CCDC179 (select the gene name)
Genetic variants : HAPMAP100500938
Genomic Variants (DGV)CCDC179 [DGVbeta]
DECIPHER (Syndromes)11:22868468-22881972  ENSG00000255359
CONAN: Copy Number AnalysisCCDC179 
Mutations
ICGC Data PortalCCDC179 
TCGA Data PortalCCDC179 
Broad Tumor PortalCCDC179
OASIS PortalCCDC179 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC179
BioMutasearch CCDC179
DgiDB (Drug Gene Interaction Database)CCDC179
DoCM (Curated mutations)CCDC179 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC179 (select a term)
intoGenCCDC179
Cancer3DCCDC179(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC179
Genetic Testing Registry CCDC179
NextProtH3BU77 [Medical]
TSGene100500938
GENETestsCCDC179
Huge Navigator CCDC179 [HugePedia]
snp3D : Map Gene to Disease100500938
BioCentury BCIQCCDC179
ClinGenCCDC179
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100500938
Clinical trialCCDC179
Miscellaneous
canSAR (ICR)CCDC179 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC179
EVEXCCDC179
GoPubMedCCDC179
iHOPCCDC179
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:31 CET 2017

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