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CCDC18 (coiled-coil domain containing 18)

Identity

Alias_symbol (synonym)NY-SAR-41
Other alias
HGNC (Hugo) CCDC18
LocusID (NCBI) 343099
Atlas_Id 41599
Location 1p22.1  [Link to chromosome band 1p22]
Location_base_pair Starts at 93180716 and ends at 93278730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC18 (1p22.1) / MBP (18q23)CCDC18 (1p22.1) / WSB2 (12q24.23)RWDD3 (1p21.3) / CCDC18 (1p22.1)
RWDD3 1p21.3 / CCDC18 1p22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC18   30370
Cards
Entrez_Gene (NCBI)CCDC18  343099  coiled-coil domain containing 18
AliasesNY-SAR-41
GeneCards (Weizmann)CCDC18
Ensembl hg19 (Hinxton)ENSG00000122483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122483 [Gene_View]  chr1:93180716-93278730 [Contig_View]  CCDC18 [Vega]
ICGC DataPortalENSG00000122483
TCGA cBioPortalCCDC18
AceView (NCBI)CCDC18
Genatlas (Paris)CCDC18
WikiGenes343099
SOURCE (Princeton)CCDC18
Genetics Home Reference (NIH)CCDC18
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC18  -     chr1:93180716-93278730 +  1p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC18  -     1p22.1   [Description]    (hg19-Feb_2009)
EnsemblCCDC18 - 1p22.1 [CytoView hg19]  CCDC18 - 1p22.1 [CytoView hg38]
Mapping of homologs : NCBICCDC18 [Mapview hg19]  CCDC18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA278251 AK126045 AW444474 AY211914 AY211918
RefSeq transcript (Entrez)NM_001306076 NM_206886
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC18
Cluster EST : UnigeneHs.745125 [ NCBI ]
CGAP (NCI)Hs.745125
Alternative Splicing GalleryENSG00000122483
Gene ExpressionCCDC18 [ NCBI-GEO ]   CCDC18 [ EBI - ARRAY_EXPRESS ]   CCDC18 [ SEEK ]   CCDC18 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343099
GTEX Portal (Tissue expression)CCDC18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T9S5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T9S5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T9S5
Splice isoforms : SwissVarQ5T9S5
PhosPhoSitePlusQ5T9S5
Domains : Interpro (EBI)Ccdc18/Sojo   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC18
DMDM Disease mutations343099
Blocks (Seattle)CCDC18
SuperfamilyQ5T9S5
Human Protein AtlasENSG00000122483
Peptide AtlasQ5T9S5
IPIIPI00642206   IPI00472654   IPI01014603   IPI00418983   IPI00410300   IPI00973846   IPI00419345   IPI00980478   IPI00978584   
Protein Interaction databases
DIP (DOE-UCLA)Q5T9S5
IntAct (EBI)Q5T9S5
FunCoupENSG00000122483
BioGRIDCCDC18
STRING (EMBL)CCDC18
ZODIACCCDC18
Ontologies - Pathways
QuickGOQ5T9S5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC18
Atlas of Cancer Signalling NetworkCCDC18
Wikipedia pathwaysCCDC18
Orthology - Evolution
OrthoDB343099
GeneTree (enSembl)ENSG00000122483
Phylogenetic Trees/Animal Genes : TreeFamCCDC18
HOVERGENQ5T9S5
HOGENOMQ5T9S5
Homologs : HomoloGeneCCDC18
Homology/Alignments : Family Browser (UCSC)CCDC18
Gene fusions - Rearrangements
Fusion : MitelmanRWDD3/CCDC18 [1p21.3/1p22.1]  [t(1;1)(p21;p22)]  
Fusion: TCGARWDD3 1p21.3 CCDC18 1p22.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC18
dbVarCCDC18
ClinVarCCDC18
1000_GenomesCCDC18 
Exome Variant ServerCCDC18
ExAC (Exome Aggregation Consortium)CCDC18 (select the gene name)
Genetic variants : HAPMAP343099
Genomic Variants (DGV)CCDC18 [DGVbeta]
DECIPHERCCDC18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC18 
Mutations
ICGC Data PortalCCDC18 
TCGA Data PortalCCDC18 
Broad Tumor PortalCCDC18
OASIS PortalCCDC18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCDC18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCDC18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC18
DgiDB (Drug Gene Interaction Database)CCDC18
DoCM (Curated mutations)CCDC18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC18 (select a term)
intoGenCCDC18
Cancer3DCCDC18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC18
Genetic Testing Registry CCDC18
NextProtQ5T9S5 [Medical]
TSGene343099
GENETestsCCDC18
Target ValidationCCDC18
Huge Navigator CCDC18 [HugePedia]
snp3D : Map Gene to Disease343099
BioCentury BCIQCCDC18
ClinGenCCDC18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343099
Chemical/Pharm GKB GenePA142672178
Clinical trialCCDC18
Miscellaneous
canSAR (ICR)CCDC18 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC18
EVEXCCDC18
GoPubMedCCDC18
iHOPCCDC18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:00:46 CEST 2017

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