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CCDC180 (coiled-coil domain containing 180)

Identity

Alias_namesKIAA1529
C9orf174
KIAA1529
chromosome 9 open reading frame 174
Alias_symbol (synonym)DKFZp434I2420
BDAG1
Other alias
HGNC (Hugo) CCDC180
LocusID (NCBI) 100499483
Atlas_Id 61526
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 97307361 and ends at 97345813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC180 (9q22.33) / NDUFA8 (9q33.2)RAPGEF1 (9q34.13) / CCDC180 (9q22.33)WDR47 (1p13.3) / CCDC180 (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC180   29303
Cards
Entrez_Gene (NCBI)CCDC180  100499483  coiled-coil domain containing 180
AliasesC9orf174
GeneCards (Weizmann)CCDC180
Ensembl hg19 (Hinxton)ENSG00000197816 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197816 [Gene_View]  chr9:97307361-97345813 [Contig_View]  CCDC180 [Vega]
ICGC DataPortalENSG00000197816
TCGA cBioPortalCCDC180
AceView (NCBI)CCDC180
Genatlas (Paris)CCDC180
WikiGenes100499483
SOURCE (Princeton)CCDC180
Genetics Home Reference (NIH)CCDC180
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC180  -     chr9:97307361-97345813 +  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC180  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblCCDC180 - 9q22.33 [CytoView hg19]  CCDC180 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBICCDC180 [Mapview hg19]  CCDC180 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123391 AK302965 AL137557 BC047097 CR627453
RefSeq transcript (Entrez)NM_001348010 NM_020893
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC180
Cluster EST : UnigeneHs.435629 [ NCBI ]
CGAP (NCI)Hs.435629
Alternative Splicing GalleryENSG00000197816
Gene ExpressionCCDC180 [ NCBI-GEO ]   CCDC180 [ EBI - ARRAY_EXPRESS ]   CCDC180 [ SEEK ]   CCDC180 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC180 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100499483
GTEX Portal (Tissue expression)CCDC180
Human Protein AtlasENSG00000197816-CCDC180 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1Z9
Splice isoforms : SwissVarQ9P1Z9
PhosPhoSitePlusQ9P1Z9
Domains : Interpro (EBI)CCDC180    DUF4455    DUF4456   
Domain families : Pfam (Sanger)DUF4455 (PF14643)    DUF4456 (PF14644)   
Domain families : Pfam (NCBI)pfam14643    pfam14644   
Conserved Domain (NCBI)CCDC180
DMDM Disease mutations100499483
Blocks (Seattle)CCDC180
SuperfamilyQ9P1Z9
Human Protein Atlas [tissue]ENSG00000197816-CCDC180 [tissue]
Peptide AtlasQ9P1Z9
IPIIPI00292836   IPI00877755   IPI00740702   IPI00477055   IPI01011830   IPI00910020   IPI00470917   IPI00952985   IPI01014593   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1Z9
IntAct (EBI)Q9P1Z9
FunCoupENSG00000197816
BioGRIDCCDC180
STRING (EMBL)CCDC180
ZODIACCCDC180
Ontologies - Pathways
QuickGOQ9P1Z9
Ontology : AmiGOintegral component of membrane  extracellular exosome  
Ontology : EGO-EBIintegral component of membrane  extracellular exosome  
NDEx NetworkCCDC180
Atlas of Cancer Signalling NetworkCCDC180
Wikipedia pathwaysCCDC180
Orthology - Evolution
OrthoDB100499483
GeneTree (enSembl)ENSG00000197816
Phylogenetic Trees/Animal Genes : TreeFamCCDC180
HOVERGENQ9P1Z9
HOGENOMQ9P1Z9
Homologs : HomoloGeneCCDC180
Homology/Alignments : Family Browser (UCSC)CCDC180
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC180
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC180 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC180
dbVarCCDC180
ClinVarCCDC180
1000_GenomesCCDC180 
Exome Variant ServerCCDC180
ExAC (Exome Aggregation Consortium)ENSG00000197816
GNOMAD BrowserENSG00000197816
Genetic variants : HAPMAP100499483
Genomic Variants (DGV)CCDC180 [DGVbeta]
DECIPHERCCDC180 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC180 
Mutations
ICGC Data PortalCCDC180 
TCGA Data PortalCCDC180 
Broad Tumor PortalCCDC180
OASIS PortalCCDC180 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC180
BioMutasearch CCDC180
DgiDB (Drug Gene Interaction Database)CCDC180
DoCM (Curated mutations)CCDC180 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC180 (select a term)
intoGenCCDC180
Cancer3DCCDC180(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC180
MedgenCCDC180
Genetic Testing Registry CCDC180
NextProtQ9P1Z9 [Medical]
TSGene100499483
GENETestsCCDC180
Target ValidationCCDC180
Huge Navigator CCDC180 [HugePedia]
snp3D : Map Gene to Disease100499483
BioCentury BCIQCCDC180
ClinGenCCDC180
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100499483
Chemical/Pharm GKB GenePA165585576
Clinical trialCCDC180
Miscellaneous
canSAR (ICR)CCDC180 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC180
EVEXCCDC180
GoPubMedCCDC180
iHOPCCDC180
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:23:07 CET 2017

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