Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CCDC182 (coiled-coil domain containing 182)

Identity

Other alias-
HGNC (Hugo) CCDC182
LocusID (NCBI) 101927581
Atlas_Id 61527
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 57744481 and ends at 57745329 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC182   49392
Cards
Entrez_Gene (NCBI)CCDC182  101927581  coiled-coil domain containing 182
Aliases
GeneCards (Weizmann)CCDC182
Ensembl hg19 (Hinxton)ENSG00000166329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166329 [Gene_View]  chr17:57744481-57745329 [Contig_View]  CCDC182 [Vega]
ICGC DataPortalENSG00000166329
TCGA cBioPortalCCDC182
AceView (NCBI)CCDC182
Genatlas (Paris)CCDC182
WikiGenes101927581
SOURCE (Princeton)CCDC182
Genetics Home Reference (NIH)CCDC182
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC182  -     chr17:57744481-57745329 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC182  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblCCDC182 - 17q22 [CytoView hg19]  CCDC182 - 17q22 [CytoView hg38]
Mapping of homologs : NCBICCDC182 [Mapview hg19]  CCDC182 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE504978 EG357680 EG357681
RefSeq transcript (Entrez)NM_001282544
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC182
Cluster EST : UnigeneHs.540784 [ NCBI ]
CGAP (NCI)Hs.540784
Alternative Splicing GalleryENSG00000166329
Gene ExpressionCCDC182 [ NCBI-GEO ]   CCDC182 [ EBI - ARRAY_EXPRESS ]   CCDC182 [ SEEK ]   CCDC182 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC182 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101927581
GTEX Portal (Tissue expression)CCDC182
Human Protein AtlasENSG00000166329-CCDC182 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NF36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NF36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NF36
Splice isoforms : SwissVarA6NF36
PhosPhoSitePlusA6NF36
Domains : Interpro (EBI)DUF4715   
Domain families : Pfam (Sanger)DUF4715 (PF15835)   
Domain families : Pfam (NCBI)pfam15835   
Conserved Domain (NCBI)CCDC182
DMDM Disease mutations101927581
Blocks (Seattle)CCDC182
SuperfamilyA6NF36
Human Protein Atlas [tissue]ENSG00000166329-CCDC182 [tissue]
Peptide AtlasA6NF36
Protein Interaction databases
DIP (DOE-UCLA)A6NF36
IntAct (EBI)A6NF36
FunCoupENSG00000166329
BioGRIDCCDC182
STRING (EMBL)CCDC182
ZODIACCCDC182
Ontologies - Pathways
QuickGOA6NF36
Ontology : AmiGOmolecular_function  cellular_component  female gonad development  
Ontology : EGO-EBImolecular_function  cellular_component  female gonad development  
NDEx NetworkCCDC182
Atlas of Cancer Signalling NetworkCCDC182
Wikipedia pathwaysCCDC182
Orthology - Evolution
OrthoDB101927581
GeneTree (enSembl)ENSG00000166329
Phylogenetic Trees/Animal Genes : TreeFamCCDC182
HOVERGENA6NF36
HOGENOMA6NF36
Homologs : HomoloGeneCCDC182
Homology/Alignments : Family Browser (UCSC)CCDC182
Gene fusions - Rearrangements
Fusion: Tumor Portal CCDC182
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC182 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC182
dbVarCCDC182
ClinVarCCDC182
1000_GenomesCCDC182 
Exome Variant ServerCCDC182
ExAC (Exome Aggregation Consortium)ENSG00000166329
GNOMAD BrowserENSG00000166329
Genetic variants : HAPMAP101927581
Genomic Variants (DGV)CCDC182 [DGVbeta]
DECIPHERCCDC182 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC182 
Mutations
ICGC Data PortalCCDC182 
TCGA Data PortalCCDC182 
Broad Tumor PortalCCDC182
OASIS PortalCCDC182 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC182
BioMutasearch CCDC182
DgiDB (Drug Gene Interaction Database)CCDC182
DoCM (Curated mutations)CCDC182 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC182 (select a term)
intoGenCCDC182
Cancer3DCCDC182(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC182
Genetic Testing Registry CCDC182
NextProtA6NF36 [Medical]
TSGene101927581
GENETestsCCDC182
Target ValidationCCDC182
Huge Navigator CCDC182 [HugePedia]
snp3D : Map Gene to Disease101927581
BioCentury BCIQCCDC182
ClinGenCCDC182
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927581
Chemical/Pharm GKB GenePA166123675
Clinical trialCCDC182
Miscellaneous
canSAR (ICR)CCDC182 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC182
EVEXCCDC182
GoPubMedCCDC182
iHOPCCDC182
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:41:41 CET 2017

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