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CCDC183 (coiled-coil domain containing 183)

Identity

Alias_namesKIAA1984
KIAA1984
Alias_symbol (synonym)MGC15438
bA216L13.7
Other aliasPARF
HGNC (Hugo) CCDC183
LocusID (NCBI) 84960
Atlas_Id 61528
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136796338 and ends at 136807741 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC183 (9q34.3) / RABL6 (9q34.3)CMIP (16q23.2) / CCDC183 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC183   28236
Cards
Entrez_Gene (NCBI)CCDC183  84960  coiled-coil domain containing 183
AliasesKIAA1984; PARF; bA216L13.7
GeneCards (Weizmann)CCDC183
Ensembl hg19 (Hinxton)ENSG00000213213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213213 [Gene_View]  chr9:136796338-136807741 [Contig_View]  CCDC183 [Vega]
ICGC DataPortalENSG00000213213
TCGA cBioPortalCCDC183
AceView (NCBI)CCDC183
Genatlas (Paris)CCDC183
WikiGenes84960
SOURCE (Princeton)CCDC183
Genetics Home Reference (NIH)CCDC183
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC183  -     chr9:136796338-136807741 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC183  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC183 - 9q34.3 [CytoView hg19]  CCDC183 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBICCDC183 [Mapview hg19]  CCDC183 [Mapview hg38]
OMIM615955   
Gene and transcription
Genbank (Entrez)AK090683 AK092639 AK094220 AW572474 BC064582
RefSeq transcript (Entrez)NM_001039374 NM_032874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC183
Cluster EST : UnigeneHs.728796 [ NCBI ]
CGAP (NCI)Hs.728796
Alternative Splicing GalleryENSG00000213213
Gene ExpressionCCDC183 [ NCBI-GEO ]   CCDC183 [ EBI - ARRAY_EXPRESS ]   CCDC183 [ SEEK ]   CCDC183 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC183 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84960
GTEX Portal (Tissue expression)CCDC183
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5S1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5S1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5S1
Splice isoforms : SwissVarQ5T5S1
PhosPhoSitePlusQ5T5S1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC183
DMDM Disease mutations84960
Blocks (Seattle)CCDC183
SuperfamilyQ5T5S1
Human Protein AtlasENSG00000213213
Peptide AtlasQ5T5S1
HPRD17234
IPIIPI00827994   IPI00852740   IPI00827971   IPI00853082   IPI00955877   IPI00383283   IPI00186163   IPI00947485   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5S1
IntAct (EBI)Q5T5S1
FunCoupENSG00000213213
BioGRIDCCDC183
STRING (EMBL)CCDC183
ZODIACCCDC183
Ontologies - Pathways
QuickGOQ5T5S1
Ontology : AmiGOcilium movement  axoneme  outer dynein arm assembly  
Ontology : EGO-EBIcilium movement  axoneme  outer dynein arm assembly  
NDEx NetworkCCDC183
Atlas of Cancer Signalling NetworkCCDC183
Wikipedia pathwaysCCDC183
Orthology - Evolution
OrthoDB84960
GeneTree (enSembl)ENSG00000213213
Phylogenetic Trees/Animal Genes : TreeFamCCDC183
HOVERGENQ5T5S1
HOGENOMQ5T5S1
Homologs : HomoloGeneCCDC183
Homology/Alignments : Family Browser (UCSC)CCDC183
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC183 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC183
dbVarCCDC183
ClinVarCCDC183
1000_GenomesCCDC183 
Exome Variant ServerCCDC183
ExAC (Exome Aggregation Consortium)CCDC183 (select the gene name)
Genetic variants : HAPMAP84960
Genomic Variants (DGV)CCDC183 [DGVbeta]
DECIPHERCCDC183 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC183 
Mutations
ICGC Data PortalCCDC183 
TCGA Data PortalCCDC183 
Broad Tumor PortalCCDC183
OASIS PortalCCDC183 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC183
BioMutasearch CCDC183
DgiDB (Drug Gene Interaction Database)CCDC183
DoCM (Curated mutations)CCDC183 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC183 (select a term)
intoGenCCDC183
Cancer3DCCDC183(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615955   
Orphanet
MedgenCCDC183
Genetic Testing Registry CCDC183
NextProtQ5T5S1 [Medical]
TSGene84960
GENETestsCCDC183
Target ValidationCCDC183
Huge Navigator CCDC183 [HugePedia]
snp3D : Map Gene to Disease84960
BioCentury BCIQCCDC183
ClinGenCCDC183
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84960
Chemical/Pharm GKB GenePA134944889
Clinical trialCCDC183
Miscellaneous
canSAR (ICR)CCDC183 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC183
EVEXCCDC183
GoPubMedCCDC183
iHOPCCDC183
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:33 CEST 2017

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