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CCDC186 (coiled-coil domain containing 186)

Identity

Alias_namesC10orf118
chromosome 10 open reading frame 118
Alias_symbol (synonym)FLJ10188
FLJ35301
Other alias
HGNC (Hugo) CCDC186
LocusID (NCBI) 55088
Atlas_Id 861
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 114120862 and ends at 114174220 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRMT1 (19q13.33) / CCDC186 (10q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC186   24349
Cards
Entrez_Gene (NCBI)CCDC186  55088  coiled-coil domain containing 186
AliasesC10orf118
GeneCards (Weizmann)CCDC186
Ensembl hg19 (Hinxton)ENSG00000165813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165813 [Gene_View]  chr10:114120862-114174220 [Contig_View]  CCDC186 [Vega]
ICGC DataPortalENSG00000165813
TCGA cBioPortalCCDC186
AceView (NCBI)CCDC186
Genatlas (Paris)CCDC186
WikiGenes55088
SOURCE (Princeton)CCDC186
Genetics Home Reference (NIH)CCDC186
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC186  -     chr10:114120862-114174220 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC186  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC186 - 10q25.3 [CytoView hg19]  CCDC186 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBICCDC186 [Mapview hg19]  CCDC186 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF273054 AI143965 AI672382 AK001050 AK024739
RefSeq transcript (Entrez)NM_001321829 NM_018017 NM_153249
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC186
Cluster EST : UnigeneHs.732218 [ NCBI ]
CGAP (NCI)Hs.732218
Alternative Splicing GalleryENSG00000165813
Gene ExpressionCCDC186 [ NCBI-GEO ]   CCDC186 [ EBI - ARRAY_EXPRESS ]   CCDC186 [ SEEK ]   CCDC186 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC186 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55088
GTEX Portal (Tissue expression)CCDC186
Human Protein AtlasENSG00000165813-CCDC186 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3E2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3E2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3E2
Splice isoforms : SwissVarQ7Z3E2
PhosPhoSitePlusQ7Z3E2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC186
DMDM Disease mutations55088
Blocks (Seattle)CCDC186
SuperfamilyQ7Z3E2
Human Protein Atlas [tissue]ENSG00000165813-CCDC186 [tissue]
Peptide AtlasQ7Z3E2
HPRD16576
IPIIPI00947080   IPI00639861   IPI00470582   IPI01011194   IPI00816151   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3E2
IntAct (EBI)Q7Z3E2
FunCoupENSG00000165813
BioGRIDCCDC186
STRING (EMBL)CCDC186
ZODIACCCDC186
Ontologies - Pathways
QuickGOQ7Z3E2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCCDC186
Atlas of Cancer Signalling NetworkCCDC186
Wikipedia pathwaysCCDC186
Orthology - Evolution
OrthoDB55088
GeneTree (enSembl)ENSG00000165813
Phylogenetic Trees/Animal Genes : TreeFamCCDC186
HOVERGENQ7Z3E2
HOGENOMQ7Z3E2
Homologs : HomoloGeneCCDC186
Homology/Alignments : Family Browser (UCSC)CCDC186
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC186
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC186 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC186
dbVarCCDC186
ClinVarCCDC186
1000_GenomesCCDC186 
Exome Variant ServerCCDC186
ExAC (Exome Aggregation Consortium)ENSG00000165813
GNOMAD BrowserENSG00000165813
Genetic variants : HAPMAP55088
Genomic Variants (DGV)CCDC186 [DGVbeta]
DECIPHERCCDC186 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC186 
Mutations
ICGC Data PortalCCDC186 
TCGA Data PortalCCDC186 
Broad Tumor PortalCCDC186
OASIS PortalCCDC186 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC186
BioMutasearch CCDC186
DgiDB (Drug Gene Interaction Database)CCDC186
DoCM (Curated mutations)CCDC186 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC186 (select a term)
intoGenCCDC186
Cancer3DCCDC186(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC186
MedgenCCDC186
Genetic Testing Registry CCDC186
NextProtQ7Z3E2 [Medical]
TSGene55088
GENETestsCCDC186
Target ValidationCCDC186
Huge Navigator CCDC186 [HugePedia]
snp3D : Map Gene to Disease55088
BioCentury BCIQCCDC186
ClinGenCCDC186
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55088
Chemical/Pharm GKB GenePA134904295
Clinical trialCCDC186
Miscellaneous
canSAR (ICR)CCDC186 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC186
EVEXCCDC186
GoPubMedCCDC186
iHOPCCDC186
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:15 CET 2017

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