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CCDC187 (coiled-coil domain containing 187)

Identity

Alias_symbol (synonym)MGC50722
Other alias-
HGNC (Hugo) CCDC187
LocusID (NCBI) 399693
Atlas_Id 79797
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 136280942 and ends at 136306901 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC187   30942
Cards
Entrez_Gene (NCBI)CCDC187  399693  coiled-coil domain containing 187
Aliases
GeneCards (Weizmann)CCDC187
Ensembl hg19 (Hinxton)ENSG00000260220 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260220 [Gene_View]  chr9:136280942-136306901 [Contig_View]  CCDC187 [Vega]
ICGC DataPortalENSG00000260220
TCGA cBioPortalCCDC187
AceView (NCBI)CCDC187
Genatlas (Paris)CCDC187
WikiGenes399693
SOURCE (Princeton)CCDC187
Genetics Home Reference (NIH)CCDC187
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC187  -     chr9:136280942-136306901 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC187  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblCCDC187 - 9q34.3 [CytoView hg19]  CCDC187 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBICCDC187 [Mapview hg19]  CCDC187 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125773 BC031926 BC042107
RefSeq transcript (Entrez)NM_001291516
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC187
Cluster EST : UnigeneHs.530383 [ NCBI ]
CGAP (NCI)Hs.530383
Alternative Splicing GalleryENSG00000260220
Gene ExpressionCCDC187 [ NCBI-GEO ]   CCDC187 [ EBI - ARRAY_EXPRESS ]   CCDC187 [ SEEK ]   CCDC187 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC187 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399693
GTEX Portal (Tissue expression)CCDC187
Human Protein AtlasENSG00000260220-CCDC187 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0A096LP49   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0A096LP49  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0A096LP49
Splice isoforms : SwissVarA0A096LP49
PhosPhoSitePlusA0A096LP49
Domains : Interpro (EBI)CEP350   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC187
DMDM Disease mutations399693
Blocks (Seattle)CCDC187
SuperfamilyA0A096LP49
Human Protein Atlas [tissue]ENSG00000260220-CCDC187 [tissue]
Peptide AtlasA0A096LP49
IPIIPI00445565   IPI00410298   
Protein Interaction databases
DIP (DOE-UCLA)A0A096LP49
IntAct (EBI)A0A096LP49
FunCoupENSG00000260220
BioGRIDCCDC187
STRING (EMBL)CCDC187
ZODIACCCDC187
Ontologies - Pathways
QuickGOA0A096LP49
Ontology : AmiGOcentrosome  microtubule binding  microtubule anchoring  
Ontology : EGO-EBIcentrosome  microtubule binding  microtubule anchoring  
NDEx NetworkCCDC187
Atlas of Cancer Signalling NetworkCCDC187
Wikipedia pathwaysCCDC187
Orthology - Evolution
OrthoDB399693
GeneTree (enSembl)ENSG00000260220
Phylogenetic Trees/Animal Genes : TreeFamCCDC187
HOVERGENA0A096LP49
HOGENOMA0A096LP49
Homologs : HomoloGeneCCDC187
Homology/Alignments : Family Browser (UCSC)CCDC187
Gene fusions - Rearrangements
Tumor Fusion PortalCCDC187
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC187 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC187
dbVarCCDC187
ClinVarCCDC187
1000_GenomesCCDC187 
Exome Variant ServerCCDC187
ExAC (Exome Aggregation Consortium)ENSG00000260220
GNOMAD BrowserENSG00000260220
Genetic variants : HAPMAP399693
Genomic Variants (DGV)CCDC187 [DGVbeta]
DECIPHERCCDC187 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC187 
Mutations
ICGC Data PortalCCDC187 
TCGA Data PortalCCDC187 
Broad Tumor PortalCCDC187
OASIS PortalCCDC187 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC187
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCDC187
DgiDB (Drug Gene Interaction Database)CCDC187
DoCM (Curated mutations)CCDC187 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC187 (select a term)
intoGenCCDC187
Cancer3DCCDC187(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCCDC187
MedgenCCDC187
Genetic Testing Registry CCDC187
NextProtA0A096LP49 [Medical]
TSGene399693
GENETestsCCDC187
Target ValidationCCDC187
Huge Navigator CCDC187 [HugePedia]
snp3D : Map Gene to Disease399693
BioCentury BCIQCCDC187
ClinGenCCDC187
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399693
Clinical trialCCDC187
Miscellaneous
canSAR (ICR)CCDC187 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC187
EVEXCCDC187
GoPubMedCCDC187
iHOPCCDC187
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:31 CET 2017

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