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CCDC188 (coiled-coil domain containing 188)

Identity

Other alias-
HGNC (Hugo) CCDC188
LocusID (NCBI) 388849
Atlas_Id 77815
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 20148586 and ends at 20149908 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCDC188   51899
Cards
Entrez_Gene (NCBI)CCDC188  388849  coiled-coil domain containing 188
Aliases
GeneCards (Weizmann)CCDC188
Ensembl hg19 (Hinxton)ENSG00000234409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234409 [Gene_View]  chr22:20148586-20149908 [Contig_View]  CCDC188 [Vega]
ICGC DataPortalENSG00000234409
TCGA cBioPortalCCDC188
AceView (NCBI)CCDC188
Genatlas (Paris)CCDC188
WikiGenes388849
SOURCE (Princeton)CCDC188
Genetics Home Reference (NIH)CCDC188
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC188  -     chr22:20148586-20149908 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC188  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblCCDC188 - 22q11.21 [CytoView hg19]  CCDC188 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBICCDC188 [Mapview hg19]  CCDC188 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU579471 DY655741 DY655742
RefSeq transcript (Entrez)NM_001243537
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC188
Cluster EST : UnigeneHs.454905 [ NCBI ]
CGAP (NCI)Hs.454905
Alternative Splicing GalleryENSG00000234409
Gene ExpressionCCDC188 [ NCBI-GEO ]   CCDC188 [ EBI - ARRAY_EXPRESS ]   CCDC188 [ SEEK ]   CCDC188 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC188 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388849
GTEX Portal (Tissue expression)CCDC188
Protein : pattern, domain, 3D structure
UniProt/SwissProtH7C350   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH7C350  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH7C350
Splice isoforms : SwissVarH7C350
PhosPhoSitePlusH7C350
Domains : Interpro (EBI)SMCO2/5   
Domain families : Pfam (Sanger)TMCO5 (PF14992)   
Domain families : Pfam (NCBI)pfam14992   
Conserved Domain (NCBI)CCDC188
DMDM Disease mutations388849
Blocks (Seattle)CCDC188
SuperfamilyH7C350
Human Protein AtlasENSG00000234409
Peptide AtlasH7C350
Protein Interaction databases
DIP (DOE-UCLA)H7C350
IntAct (EBI)H7C350
FunCoupENSG00000234409
BioGRIDCCDC188
STRING (EMBL)CCDC188
ZODIACCCDC188
Ontologies - Pathways
QuickGOH7C350
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCCDC188
Atlas of Cancer Signalling NetworkCCDC188
Wikipedia pathwaysCCDC188
Orthology - Evolution
OrthoDB388849
GeneTree (enSembl)ENSG00000234409
Phylogenetic Trees/Animal Genes : TreeFamCCDC188
HOVERGENH7C350
HOGENOMH7C350
Homologs : HomoloGeneCCDC188
Homology/Alignments : Family Browser (UCSC)CCDC188
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCDC188 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCDC188
dbVarCCDC188
ClinVarCCDC188
1000_GenomesCCDC188 
Exome Variant ServerCCDC188
ExAC (Exome Aggregation Consortium)CCDC188 (select the gene name)
Genetic variants : HAPMAP388849
Genomic Variants (DGV)CCDC188 [DGVbeta]
DECIPHERCCDC188 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCDC188 
Mutations
ICGC Data PortalCCDC188 
TCGA Data PortalCCDC188 
Broad Tumor PortalCCDC188
OASIS PortalCCDC188 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCDC188
BioMutasearch CCDC188
DgiDB (Drug Gene Interaction Database)CCDC188
DoCM (Curated mutations)CCDC188 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCDC188 (select a term)
intoGenCCDC188
Cancer3DCCDC188(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCDC188
Genetic Testing Registry CCDC188
NextProtH7C350 [Medical]
TSGene388849
GENETestsCCDC188
Target ValidationCCDC188
Huge Navigator CCDC188 [HugePedia]
snp3D : Map Gene to Disease388849
BioCentury BCIQCCDC188
ClinGenCCDC188
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388849
Clinical trialCCDC188
Miscellaneous
canSAR (ICR)CCDC188 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC188
EVEXCCDC188
GoPubMedCCDC188
iHOPCCDC188
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:42:34 CEST 2017

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